GenFooT: Genomic Footprint of mitochondrial sequence for Taxonomy classification

Author(s):  
Aritra Mahapatra ◽  
Jayanta Mukherjee
2003 ◽  
Vol 89 (1) ◽  
pp. 196-198 ◽  
Author(s):  
Y. Ushijima ◽  
J. H. Oliver ◽  
J. E. Keirans ◽  
M. Tsurumi ◽  
H. Kawabata ◽  
...  

Author(s):  
Yunfan Fan ◽  
Andrew N Gale ◽  
Anna Bailey ◽  
Kali Barnes ◽  
Kiersten Colotti ◽  
...  

Abstract We present a highly contiguous genome and transcriptome of the pathogenic yeast, Candida nivariensis. We sequenced both the DNA and RNA of this species using both the Oxford Nanopore Technologies (ONT) and Illumina platforms. We assembled the genome into an 11.8 Mb draft composed of 16 contigs with an N50 of 886 Kb, including a circular mitochondrial sequence of 28 Kb. Using direct RNA nanopore sequencing and Illumina cDNA sequencing, we constructed an annotation of our new assembly, supplemented by lifting over genes from Saccharomyces cerevisiae and Candida glabrata.


2013 ◽  
Vol 92 (2) ◽  
pp. 299-303
Author(s):  
SIRIKUL THUMMAJITSAKUL ◽  
KUN SILPRASIT ◽  
SIRAWUT KLINBUNGA ◽  
SIRIPORN SITTIPRANEED

2006 ◽  
Vol 41 (2) ◽  
pp. 333-344 ◽  
Author(s):  
Dario Zuccon ◽  
Alice Cibois ◽  
Eric Pasquet ◽  
Per G.P. Ericson

Author(s):  
Hermes Ribeiro Luz ◽  
Bruna Barboza Bezerra ◽  
Walter Flausino ◽  
Arlei Marcili ◽  
Sebastián Muñoz-Leal ◽  
...  

Abstract Although a group of soft ticks (Argasidae) associated with amphibians was recently discovered in Brazilian rainforests, parasitism by these ticks on cold-blooded animals remains less common than on mammal and bird species. In this study, we identified ticks that were collected from toads that had been caught in December 2016 and January 2017, at Itinguçú waterfall (22°54’05” S; 43°53’30” W) in the municipality of Itaguaí, state of Rio de Janeiro. Tick specimens were identified using a morphological and molecular approach. In total, twelve larvae of Ornithodoros ticks were collected from three individuals of Rhinella ornata and were identified as Ornithodoros faccinii. Our results include a longer 16S rRNA mitochondrial sequence for O. faccinii that supports its phylogenetic relatedness to Ornithodoros saraivai, and we report this tick species parasitizing Rhinella toads for the first time in Brazil.


1996 ◽  
Vol 60 (4) ◽  
pp. 331-350 ◽  
Author(s):  
H. B. S. M. CÔRTE-REAL ◽  
V. A. MACAULAY ◽  
M. B. RICHARDS ◽  
G. HARITI ◽  
M. S. ISSAD ◽  
...  

PLoS ONE ◽  
2014 ◽  
Vol 9 (9) ◽  
pp. e108096 ◽  
Author(s):  
Amanda V. Rocha ◽  
Luis O. Rivera ◽  
Jaime Martinez ◽  
Nêmora P. Prestes ◽  
Renato Caparroz

BioTechniques ◽  
2002 ◽  
Vol 32 (1) ◽  
pp. 124-133 ◽  
Author(s):  
H. Andréasson ◽  
A. Asp ◽  
A. Alderborn ◽  
U. Gyllensten ◽  
M. Allen

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