Granger causality: Comparative analysis of implementations for Gene Regulatory Networks

2014 ◽  
Author(s):  
M. Y. Siyal ◽  
M. S. Furqan ◽  
Syed Muhammad G. Monir
Keyword(s):  
Comparative Analysis ◽  
Granger Causality ◽  
Gene Regulatory Networks ◽  
Regulatory Networks ◽  
Gene Regulatory

scholarly journals Prophetic Granger Causality to infer gene regulatory networks

PLoS ONE ◽  
2017 ◽  
Vol 12 (12) ◽  
pp. e0170340 ◽  
Author(s):  
Daniel E. Carlin ◽  
Evan O. Paull ◽  
Kiley Graim ◽  
Christopher K. Wong ◽  
Adrian Bivol ◽  
...  
Keyword(s):  
Granger Causality ◽  
Gene Regulatory Networks ◽  
Regulatory Networks ◽  
Gene Regulatory

scholarly journals A comparative analysis of synthetic genetic oscillators

2010 ◽  
Vol 7 (52) ◽  
pp. 1503-1524 ◽  
Author(s):  
Oliver Purcell ◽  
Nigel J. Savery ◽  
Claire S. Grierson ◽  
Mario di Bernardo
Keyword(s):  
Experimental Data ◽  
Comparative Analysis ◽  
Time Delay ◽  
Synthetic Biology ◽  
Gene Regulatory Networks ◽  
Network Topology ◽  
Regulatory Networks ◽  
State Of The Art ◽  
Gene Regulatory ◽  
Future Work

Synthetic biology is a rapidly expanding discipline at the interface between engineering and biology. Much research in this area has focused on gene regulatory networks that function as biological switches and oscillators. Here we review the state of the art in the design and construction of oscillators, comparing the features of each of the main networks published to date, the models used for in silico design and validation and, where available, relevant experimental data. Trends are apparent in the ways that network topology constrains oscillator characteristics and dynamics. Also, noise and time delay within the network can both have constructive and destructive roles in generating oscillations, and stochastic coherence is commonplace. This review can be used to inform future work to design and implement new types of synthetic oscillators or to incorporate existing oscillators into new designs.

Comparative analysis of salt responsive gene regulatory networks in rice and Arabidopsis

2020 ◽  
Vol 85 ◽  
pp. 107188
Author(s):  
Rui Wang ◽  
Yanhao Cheng ◽  
Xiaojuan Ke ◽  
Xiaofan Zhang ◽  
Hongsheng Zhang ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Gene Regulatory Networks ◽  
Regulatory Networks ◽  
Gene Regulatory ◽  
Responsive Gene
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