Combinatorial Code Classification & Vulnerability Rating

Author(s):  
Joseph R. Barr ◽  
Peter Shaw ◽  
Faisal N. Abu-Khzam ◽  
Sheng Yu ◽  
Heng Yin ◽  
...  
Keyword(s):  
2015 ◽  
Vol 6 (1) ◽  
Author(s):  
Antonio Cappuccio ◽  
Raphaël Zollinger ◽  
Mirjam Schenk ◽  
Aleksandra Walczak ◽  
Nicolas Servant ◽  
...  

2017 ◽  
Vol 114 (20) ◽  
pp. E3974-E3983 ◽  
Author(s):  
Szilard Sajgo ◽  
Miruna Georgiana Ghinia ◽  
Matthew Brooks ◽  
Friedrich Kretschmer ◽  
Katherine Chuang ◽  
...  

Visual information is conveyed from the eye to the brain by distinct types of retinal ganglion cells (RGCs). It is largely unknown how RGCs acquire their defining morphological and physiological features and connect to upstream and downstream synaptic partners. The three Brn3/Pou4f transcription factors (TFs) participate in a combinatorial code for RGC type specification, but their exact molecular roles are still unclear. We use deep sequencing to define (i) transcriptomes of Brn3a- and/or Brn3b-positive RGCs, (ii) Brn3a- and/or Brn3b-dependent RGC transcripts, and (iii) transcriptomes of retinorecipient areas of the brain at developmental stages relevant for axon guidance, dendrite formation, and synaptogenesis. We reveal a combinatorial code of TFs, cell surface molecules, and determinants of neuronal morphology that is differentially expressed in specific RGC populations and selectively regulated by Brn3a and/or Brn3b. This comprehensive molecular code provides a basis for understanding neuronal cell type specification in RGCs.


Author(s):  
Junita M. Nordin ◽  
◽  
Syed Alwee Aljunid ◽  
Rosemizi Abd Rahim ◽  
Anuar M. Safar ◽  
...  

2005 ◽  
Vol 280 (36) ◽  
pp. 31664-31672 ◽  
Author(s):  
Shin-ichiro Kubo ◽  
Venu M. Nemani ◽  
Robert J. Chalkley ◽  
Malcolm D. Anthony ◽  
Nobutaka Hattori ◽  
...  
Keyword(s):  

PLoS Biology ◽  
2005 ◽  
Vol 3 (5) ◽  
pp. e158 ◽  
Author(s):  
Kyoungha Han ◽  
Gene Yeo ◽  
Ping An ◽  
Christopher B Burge ◽  
Paula J Grabowski
Keyword(s):  

2021 ◽  
Author(s):  
Ettore Tiraboschi ◽  
Luana Leonardelli ◽  
Gianluca Segata ◽  
Elisa Rigosi ◽  
Albrecht Haase

We report that airflow produces a complex activation pattern in the antennal lobes of the honeybee Apis mellifera. Glomerular response maps provide a stereotypical code for the intensity and the dynamics of mechanical stimuli that is superimposed on the olfactory code. We show responses to modulated stimuli suggesting that this combinatorial code could provide information about the intensity, direction, and dynamics of the airflow during flight and waggle dance communication.


2020 ◽  
Vol 104 ◽  
pp. 103469 ◽  
Author(s):  
Claire A. de March ◽  
William B. Titlow ◽  
Tomoko Sengoku ◽  
Patrick Breheny ◽  
Hiroaki Matsunami ◽  
...  

2019 ◽  
Vol 2 (1) ◽  
Author(s):  
Hiroaki Mano ◽  
Yoichi Asaoka ◽  
Daisuke Kojima ◽  
Yoshitaka Fukada

Abstract The pineal gland functioning as a photoreceptive organ in non-mammalian species is a serial homolog of the retina. Here we found that Brain-specific homeobox (Bsx) is a key regulator conferring individuality on the pineal gland between the two serially homologous photoreceptive organs in zebrafish. Bsx knock-down impaired the pineal development with reduced expression of exorh, the pineal-specific gene responsible for the photoreception, whereas it induced ectopic expression of rho, a retina-specific gene, in the pineal gland. Bsx remarkably transactivated the exorh promoter in combination with Otx5, but not with Crx, through its binding to distinct subtypes of PIRE, a DNA cis-element driving Crx/Otx-dependent pineal-specific gene expression. These results demonstrate that the identity of pineal photoreceptive neurons is determined by the combinatorial code of Bsx and Otx5, the former confers the pineal specificity at the tissue level and the latter determines the photoreceptor specificity at the cellular level.


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