Root exudates increase soil respiration and alter microbial community structure in alpine permafrost and active layer soils

Author(s):  
Magdalene Adamczyk ◽  
Joel Rüthi ◽  
Beat Frey
2020 ◽  
Vol 22 (1) ◽  
pp. 217-226 ◽  
Author(s):  
Xin-nan Tong ◽  
Xin-ze Wang ◽  
Xiao-juan He ◽  
Zhe Wang ◽  
Wen-xuan Li

In the rhizosphere, plant root exudates can mediate the toxicity of antibiotics on microorganisms, yet the mechanisms are poorly understood.


Forests ◽  
2019 ◽  
Vol 10 (5) ◽  
pp. 435 ◽  
Author(s):  
Jiacong Zhou ◽  
Xiaofei Liu ◽  
Jinsheng Xie ◽  
Maokui Lyu ◽  
Yong Zheng ◽  
...  

Forest soil respiration plays an important role in global carbon (C) cycling. Owing to the high degree of C and nitrogen (N) cycle coupling, N deposition rates may greatly influence forest soil respiration, and possibly even global C cycling. Soil microbes play a crucial role in regulating the biosphere–atmosphere C exchange; however, how microbes respond to N addition remains uncertain. To better understand this process, the experiment was performed in the Castanopsis kawakamii Hayata Nature Reserve, in the subtropical zone of China. Treatments involved applying different levels of N (0, 40, and 80 kg ha−2 year−1) over a three-year period (January 2013–December 2015) to explore how soil physicochemical properties, respiration rate, phospholipid fatty acid (PLFA) concentration, and solid state 13C nuclear magnetic resonance responded to various N addition rate. Results showed that high levels of N addition significantly decreased soil respiration; however, low levels of N addition significantly increased soil respiration. High levels of N reduced soil pH and enhanced P and C co-limitation of microorganisms, leading to significant reductions in total PLFA and changes in the structure of microbial communities. Significant linear relationships were observed between annual cumulative respiration and the concentration of microbial biomass (total PLFA, gram-positive bacteria (G+), gram-negative bacteria (G−), total bacteria, and fungi) and the microbial community structure (G+: G− ratio). Taken together, increasing N deposition changed microbial community structure and suppressed microbial biomass, ultimately leading to recalcitrant C accumulation and soil C emissions decrease in subtropical forest.


2021 ◽  
Author(s):  
Peter Stimmler ◽  
Anders Priemé ◽  
Bo Elberling ◽  
Mathias Goeckede ◽  
Jörg Schaller

2021 ◽  
Vol 12 ◽  
Author(s):  
Kira A. Borden ◽  
Tolulope G. Mafa-Attoye ◽  
Kari E. Dunfield ◽  
Naresh V. Thevathasan ◽  
Andrew M. Gordon ◽  
...  

Predicting respiration from roots and soil microbes is important in agricultural landscapes where net flux of carbon from the soil to the atmosphere is of large concern. Yet, in riparian agroecosystems that buffer aquatic environments from agricultural fields, little is known on the differential contribution of CO2 sources nor the systematic patterns in root and microbial communities that relate to these emissions. We deployed a field-based root exclusion experiment to measure heterotrophic and autotrophic-rhizospheric respiration across riparian buffer types in an agricultural landscape in southern Ontario, Canada. We paired bi-weekly measurements of in-field CO2 flux with analysis of soil properties and fine root functional traits. We quantified soil microbial community structure using qPCR to estimate bacterial and fungal abundance and characterized microbial diversity using high-throughput sequencing. Mean daytime total soil respiration rates in the growing season were 186.1 ± 26.7, 188.7 ± 23.0, 278.6 ± 30.0, and 503.4 ± 31.3 mg CO2-C m–2 h–1 in remnant coniferous and mixed forest, and rehabilitated forest and grass buffers, respectively. Contributions of autotrophic-rhizospheric respiration to total soil CO2 fluxes ranged widely between 14 and 63% across the buffers. Covariation in root traits aligned roots of higher specific root length and nitrogen content with higher specific root respiration rates, while microbial abundance in rhizosphere soil coorindated with roots that were thicker in diameter and higher in carbon to nitrogen ratio. Variation in autotrophic-rhizospheric respiration on a soil area basis was explained by soil temperature, fine root length density, and covariation in root traits. Heterotrophic respiration was strongly explained by soil moisture, temperature, and soil carbon, while multiple factor analysis revealed a positive correlation with soil microbial diversity. This is a first in-field study to quantify root and soil respiration in relation to trade-offs in root trait expression and to determine interactions between root traits and soil microbial community structure to predict soil respiration.


2015 ◽  
Vol 89 ◽  
pp. 123-134 ◽  
Author(s):  
Loïc Nazaries ◽  
William Tottey ◽  
Lucinda Robinson ◽  
Amit Khachane ◽  
Waleed Abu Al-Soud ◽  
...  

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