Transcriptome and Proteomics Analysis of Wheat Seedling Roots Reveals That Increasing NH4+/NO3– Ratio Induced Root Lignification and Reduced Nitrogen Utilization

Wheat growth and nitrogen (N) uptake gradually decrease in response to high NH4+/NO3– ratio. However, the mechanisms underlying the response of wheat seedling roots to changes in NH4+/NO3– ratio remain unclear. In this study, we investigated wheat growth, transcriptome, and proteome profiles of roots in response to increasing NH4+/NO3– ratios (Na: 100/0; Nr1: 75/25, Nr2: 50/50, Nr3: 25/75, and Nn: 0/100). High NH4+/NO3– ratio significantly reduced leaf relative chlorophyll content, Fv/Fm, and ΦII values. Both total root length and specific root length decreased with increasing NH4+/NO3– ratios. Moreover, the rise in NH4+/NO3– ratio significantly promoted O2– production. Furthermore, transcriptome sequencing and tandem mass tag-based quantitative proteome analyses identified 14,376 differentially expressed genes (DEGs) and 1,819 differentially expressed proteins (DEPs). The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis indicated that glutathione metabolism and phenylpropanoid biosynthesis were the main two shared enriched pathways across ratio comparisons. Upregulated DEGs and DEPs involving glutathione S-transferases may contribute to the prevention of oxidative stress. An increment in the NH4+/NO3– ratio induced the expression of genes and proteins involved in lignin biosynthesis, which increased root lignin content. Additionally, phylogenetic tree analysis showed that both A0A3B6NPP6 and A0A3B6LM09 belong to the cinnamyl-alcohol dehydrogenase subfamily. Fifteen downregulated DEGs were identified as high-affinity nitrate transporters or nitrate transporters. Upregulated TraesCS3D02G344800 and TraesCS3A02G350800 were involved in ammonium transport. Downregulated A0A3B6Q9B3 is involved in nitrate transport, whereas A0A3B6PQS3 is a ferredoxin-nitrite reductase. This may explain why an increase in the NH4+/NO3– ratio significantly reduced root NO3–-N content but increased NH4+-N content. Overall, these results demonstrated that increasing the NH4+/NO3– ratio at the seedling stage induced the accumulation of reactive oxygen species, which in turn enhanced root glutathione metabolism and lignification, thereby resulting in increased root oxidative tolerance at the cost of reducing nitrate transport and utilization, which reduced leaf photosynthetic capacity and, ultimately, plant biomass accumulation.

Influence of Copper Pollution of Haplic Calcic Chernozem With Various Contents of Sand Fractions on Morphobiometric Indicators of Spring Barley

The growth and development of plants is one of the criteria for assessing the degree of soil pollution with heavy metals. Morphological and anatomical changes in test plants affected by pollutants, such as growth retardation, shoot bending, and decreased root length and mass, indicate the worsening of environmental conditions. The effect of various ratios of soil and sand polluted with copper (Cu) on morphobiometric parameters of spring barley (Hordeum sativum distichum), Ratnik variety, was studied in a model vegetative experiment. Haplic calcic chernozem was used as a substrate with different ratios of soil/sand. It was determined that an addition of sand into the soil in the amounts of 25%, 50% and 75% of soil mass resulted in the alteration of the physical properties of the chernozem, which was reflected in the morphometric parameters of the plants. The most notable changes in the parameters were observed after pollution of soil-sand substrates with Cu(CH3COO)2 in the amounts of 250 mg/kg, 500 mg/kg, 1000 mg/kg and 2000 mg/kg. The maximum growth and development retardation of the barley plants was found at the maximum content of sand and the maximum concentration of Cu. The pollutant reduced the root length and, to a lesser degree, the height of the aboveground components of the plant, which as a result, decreased the total plant biomass. Keywords: trace elements, soil, agricultural crops, particle size distribution

Root resorption in relation to a modified piezocision technique

ABSTRACT Objectives To evaluate root resorption of lower incisors and canines quantitatively in a group of patients who underwent orthodontic treatment with piezocision and/or a collagen reinforcement technique with a fully resorbable three-dimensional (3D) collagen xenograft matrix compared with a control group. Materials and Methods The study sample of this secondary analysis consisted of 32 periodontally healthy patients with angle Class I malocclusion or mild Class II or III malocclusion and moderate irregularity index scores who underwent orthodontic treatment and had before (T0) and after treatment (T1) cone-beam computed tomography scans. Root resorption of lower incisors and canines was assessed quantitatively in the following four groups: the control group received orthodontic treatment without piezocision, experimental group 1 received orthodontic treatment with piezocision, experimental group 2 received orthodontic treatment with piezocision and a 3D collagen matrix, and experimental group 3 received orthodontic treatment with a 3D collagen matrix. Results An overall statistically significant decrease in root length from T0 to T1 for all groups was observed (P < .05). However, there was no significant difference among the groups in the amount of root length decrease from T0 to T1. Conclusions Orthodontic treatment combined with piezocision does not increase the risk of root resorption of lower incisors and canines when compared with orthodontic treatment without acceleration techniques. More studies with larger samples should be undertaken to confirm these results.

Evaluation of radish genotypes with special study on sowing geometry at agricultural research institute, Tarnab, Peshawar

The research was carried out on the “Evaluation of Radish genotypes with special study on sowing geometry at Agricultural Research Institute, Tarnab Peshawar”. The experiment was laid out in randomized complete block design having three replications. The experiment comprised with two factors, one was sowing dates(19th Oct., 4th., Nov., and 19th Nov) and the other was different genotypes (Mino, Local Red and Local White). The data were recorded on Days to germination, Germination (%), Days to edible maturity, Number of leaves plant-1, Leaf length plant-1 (cm), Root length plant-1 (cm), Root diameter plant-1 (cm), root fresh weight (g), Plot weight (kg) and yield (t ha-1). Sowing dates significantly affected all yield parameters. Sowing of radish on 19th October has more number of Leaves (17.44 leaves) plant-1, Leaf length plant(22.611 cm), root length plant-1(24.058 cm), root diameter plant-1(3.12 cm) fresh root weight (503.95g), the maximum plot weight (50.90 kg plot-1) and higher yield (62.36t ha-1) was observed whereas the crop sown on 19th November showed the minimum days to germination (8.88 days), germination percentage (96.88%) and minimum days to maturity (53 days). Among genotypes Mino take minimum days to germinate(8.22 days), maximum germination percentage (99.22), minimum days to maturity (52.778), maximum number of leaves (19.44 leaves), leaf length (23.422 cm), greater root length (24.588 cm), maximum root diameter (3.53 cm), higher root fresh weight (536.62g), higher weight per plot (52.22 kg) and maximum yield (63.54t ha-1). The results emphasized that the suitable time of sowing for Mino genotype is 19th October for Peshawar.

Effects of Phosphorus on Growth and Development of Soybean Seedlings

Soybean seedlings were treated with different phosphorus (P) concentrations for 20 days to investigate their growth and development. The root growth and development of soybean seedlings was the best when the concentration of phosphorus was 250 μmol/L. After 20 days of cultivation at this concentration, the roots of soybean seedlings were developed, indicating that the main root length, lateral root length, and the number of lateral root was the best among all treatments, and the number of lateral roots was quite a few. In addition, when the concentration of P was at 250 μmol/L, it had a better promotion effect on the plant height of soybean seedlings, and could significantly enhance the development of soybean seedlings. Moreover, the growth of soybean seedlings would be inhibited at the condition of phosphorus deficiency or excessive phosphorus. In this experiment, the growth indexes of soybean seedlings were compared between four treatments of phosphorus concentration, so as to make a basic study on the physiological effect of soybean on phosphorus in early stage.

Improving of true shallot seeds germination by the application of plant growth regulators and osmoconditioning treatment

This study aims to determine the effect of the application of plant growth regulators and osmoconditioning treatment to improve the germination of true shallot seeds. This research was conducted in Asam Kumbang, Medan Selayang, Medan, Indonesia. The research method was a Randomize Block Design with 2 factors, the first factor is Plant Growth Regulators (Z) with 6 levels, namely Z0 (Without PGRs Application), Z1 (Gibberellin 500 ppm), Z2 (Putrescine 15 ppm), Z3 (Putrescine 20 ppm), Z4 (Putrescine 15 ppm + Gibberellin 500 ppm), Z5 (Putrescine 20 ppm + Gibberellin 500 ppm). The second factor was the osmoconditioning treatment with Polyethylene Glycol (PEG) 6000 (O) with 4 levels, namely O0 (Without Osmoconditioning Treatment), O1 (PEG 6000 3%), O2 (PEG 6000 4%), O3 (PEG 6000 5%). Parameters observed were germination rate, germination rate index, percentage of germination, germination ability, simultaneous growth of seeds, seedling length, root length, seedling dry weight, and catalase activity test. The results of this study were: application of plant growth regulators could improve true shallot seed germination, indicated by the observed values of all parameters which were significantly different from those of the control (without PGRs application). The plant growth regulator that produced the best increase in germination was Gibberellins 500 ppm, although the difference in effect with other PGRs was not significantly different. Meanwhile, the osmoconditioning treatment with PEG 6000 was also able to improve the germination of true shallot seeds as indicated by an increase in most of the observed parameters, but in the root length parameter it was seen that the tendency of PEG 6000 3% always gave the highest value but gave the lowest value for this parameter. The best concentration of PEG 6000 in the osmoconditioning treatment to improve true shallot seed germination was 3%.

Root system architecture and seed weight relations in forage pea (Pisum sativum ssp. arvense L. Poir.)

ABSTRACT: Forage pea (Pisum sativum ssp. arvense (L.) Poir.) is an important legume crop for fresh and dry herbage production with high input costs as irrigation and fertilization. Selection and breeding of accessions for improved drought tolerance, water, and mineral uptake efficiency become a necessity, rather than a choice. This study evaluated a set of forage pea accessions for the seedling root system architecture diversity and seed reserve utilization, under controlled conditions. Eight cultivars and an elite breeding line were evaluated for the first time in a plexiglass system. The number and lengths of the roots in each depth zone (0, 5, 10, 15+ cm) were evaluated and significant diversity was identified. The cultivar Livioletta had the highest number of roots and total root length. There was a significant correlation between seed weight, seed reserve utilization ratio, and root system vigor. Accessions with the highest seed reserve utilization had the highest total root length and numbers. Seedling root system vigor seems to be effective in predicting the fate of the accessions through maturity. The results suggested a possibility of “seedling root selection” for forage crop breeding.

Vermicompost humates as a salinity mitigator in the germination of basil

ABSTRACT: This study determined the effect of vermicompost humates as salinity mitigator in germination and morphometric characteristics of basil varieties seedlings, tolerant and sensitive to salinity, subjected to vermicompost humates diluted 1/60 (v/v) and 0, 50 and 100 mM NaCl in a completely randomized design with four replications. The rate and percentage of germination, root length, shoot height, root and shoot fresh and dry-weight were measured. The varieties showed differential response, highlighting Napoletano as the most tolerant. Vermicompost humates showed biostimulant effects on variables evaluated, allowing that tolerant variety to improve germination and growth, and increasing the salinity tolerance of the sensitive variety.

The relationship between the genetic status of the Vrn-1 locus and the size of the root system in bread wheat (Triticum aestivum L.)

One of the main ways to fine-tune the adaptive potential of wheat cultivars is to regulate the timing of flowering using the genes of the Vrn-1 locus, which determines the type and rate of development. Recently, with the use of introgression and isogenic lines of bread wheat, it was shown that this locus is involved in the genetic control of root length and weight both under irrigation and drought conditions. It turned out that the VrnA1 gene is associated with a significant decrease in the size of the root system in a winter genotype. The Vrn-A1 gene had the strongest effect on the reduction of the root system in comparison with the homoeoallelic genes Vrn-B1 and Vrn-D1. The aim of this work was to determine whether the allelic composition of the genes at the Vrn-1 locus affects the root size in seven spring cultivars and in two lines of bread wheat differing in flowering time under conditions of normal watering and drought. The research was carried out in a hydroponic greenhouse; drought was created at the tillering stage. In this work, we have shown that early flowering wheat cultivars with the dominant Vrn-A1а allele have more lightweight and shorter roots under normal watering conditions compared to the late flowering carriers of the dominant homoeoalleles Vrn-B1 and Vrn-D1. In drought conditions, the root length decreased insignificantly, but the weight of the roots significantly decreased in all genotypes, with the exception of Diamant 2. It has been hypothesized that the level of the transcription factor VRN-1 at the onset of drought may affect the size of the root system. The large variability in root weight may indicate the participation, in addition to the Vrn-1 locus, of other gene networks in the formation of this trait. Breeders working to develop early maturing varieties should consider the possibility of reducing the root size, especially in arid conditions. A significant increase in the root size of line 821 with introgressions into chromosomes 2A, 2B, and 5A from T. timopheevii indicates the possibility of using congeners as a source of increasing the trait in wheat.