scholarly journals Detection and phylogenetic analysis of the membrane-bound nitrate reductase (Nar) in pure cultures and microbial communities from deep-sea hydrothermal vents

2013 ◽  
Vol 86 (2) ◽  
pp. 256-267 ◽  
Author(s):  
Ileana Pérez-Rodríguez ◽  
Kenneth A. Bohnert ◽  
Mariola Cuebas ◽  
Ramaydalis Keddis ◽  
Costantino Vetriani
2020 ◽  
Vol 50 (6) ◽  
Author(s):  
Elin A. Thomas ◽  
Ruoyu Liu ◽  
Diva Amon ◽  
Jon T. Copley ◽  
Adrian G. Glover ◽  
...  

AbstractChemosynthetic ecosystems have long been acknowledged as key areas of enrichment for deep-sea life, supporting hundreds of endemic species. Echinoderms are among the most common taxa inhabiting the periphery of chemosynthetic environments, and of these, chiridotid holothurians are often the most frequently observed. Yet, published records of chiridotids in these habitats are often noted only as supplemental information to larger ecological studies and several remain taxonomically unverified. This study therefore aimed to collate and review all known records attributed to Chiridota Eschscholtz, 1829, and to conduct the first phylogenetic analysis into the relationship of these chiridotid holothurians across global chemosynthetic habitats. We show that Chiridota heheva Pawson & Vance, 2004 is a globally widespread, cosmopolitan holothurian that occupies all three types of deep-sea chemosynthetic ecosystem—hydrothermal vents, cold seeps and organic falls—as an organic-enrichment opportunist. Furthermore, we hypothesise that C. heheva may be synonymous with another vent-endemic chiridotid, Chiridota hydrothermica Smirnov et al., 2000, owing to the strong morphological, ecological and biogeographical parallels between the two species, and predict that any chiridotid holothurians subsequently discovered at global reducing environments will belong to this novel species complex. This study highlights the importance of understudied, peripheral taxa, such as holothurians, to provide insights to biogeography, connectivity and speciation at insular deep-sea habitats.


mSystems ◽  
2021 ◽  
Author(s):  
Elaina Thomas ◽  
Rika E. Anderson ◽  
Viola Li ◽  
L. Jenni Rogan ◽  
Julie A. Huber

Viruses play important roles in manipulating microbial communities and their evolution in the ocean, yet not much is known about viruses in deep-sea hydrothermal vents. However, viral ecology and evolution are of particular interest in hydrothermal vent habitats because of their unique nature: previous studies have indicated that most viruses in hydrothermal vents are temperate rather than lytic, and it has been established that rates of horizontal gene transfer (HGT) are particularly high among thermophilic vent microbes, and viruses are common vectors for HGT.


Minerals ◽  
2021 ◽  
Vol 11 (12) ◽  
pp. 1324
Author(s):  
Shamik Dasgupta ◽  
Xiaotong Peng ◽  
Kaiwen Ta

The discovery of deep-sea hydrothermal vents in the late 1970s widened the limits of life and habitability. The mixing of oxidizing seawater and reduction of hydrothermal fluids create a chemical disequilibrium that is exploited by chemosynthetic bacteria and archaea to harness energy by converting inorganic carbon into organic biomass. Due to the rich variety of chemical sources and steep physico-chemical gradients, a large array of microorganisms thrive in these extreme environments, which includes but are not restricted to chemolithoautotrophs, heterotrophs, and mixotrophs. Past research has revealed the underlying relationship of these microbial communities with the subsurface geology and hydrothermal geochemistry. Endolithic microbial communities at the ocean floor catalyze a number of redox reactions through various metabolic activities. Hydrothermal chimneys harbor Fe-reducers, sulfur-reducers, sulfide and H2-oxidizers, methanogens, and heterotrophs that continuously interact with the basaltic, carbonate, or ultramafic basement rocks for energy-yielding reactions. Here, we briefly review the global deep-sea hydrothermal systems, microbial diversity, and microbe–mineral interactions therein to obtain in-depth knowledge of the biogeochemistry in such a unique and geologically critical subseafloor environment.


2015 ◽  
Vol 81 (15) ◽  
pp. 5003-5014 ◽  
Author(s):  
Christine Martineau ◽  
Florian Mauffrey ◽  
Richard Villemur

ABSTRACTHyphomicrobiumspp. are commonly identified as major players in denitrification systems supplied with methanol as a carbon source. However, denitrifyingHyphomicrobiumspecies are poorly characterized, and very few studies have provided information on the genetic and physiological aspects of denitrification in pure cultures of these bacteria. This is a comparative study of three denitrifyingHyphomicrobiumspecies,H. denitrificansATCC 51888,H. zavarziniiZV622, and a newly described species,H. nitrativoransNL23, which was isolated from a denitrification system treating seawater. Whole-genome sequence analyses revealed that although they share numerous orthologous genes, these three species differ greatly in their nitrate reductases, with gene clusters encoding a periplasmic nitrate reductase (Nap) inH. nitrativorans, a membrane-bound nitrate reductase (Nar) inH. denitrificans, and one Nap and two Nar enzymes inH. zavarzinii. Concurrently with these differences observed at the genetic level, important differences in the denitrification capacities of theseHyphomicrobiumspecies were determined.H. nitrativoransgrew and denitrified at higher nitrate and NaCl concentrations than did the two other species, without significant nitrite accumulation. Significant increases in the relative gene expression levels of the nitrate (napA) and nitrite (nirK) reductase genes were also noted forH. nitrativoransat higher nitrate and NaCl concentrations. Oxygen was also found to be a strong regulator of denitrification gene expression in bothH. nitrativoransandH. zavarzinii, although individual genes responded differently in these two species. Taken together, the results presented in this study highlight the potential ofH. nitrativoransas an efficient and adaptable bacterium that is able to perform complete denitrification under various conditions.


Sign in / Sign up

Export Citation Format

Share Document