Variable seed bed microsite conditions and light influence germination in Australian winter annuals

Environmentally cued germination may play an important role in promoting coexistence in Mediterranean annual plant systems if it causes niche differentiation across heterogeneous microsite conditions. In this study, we tested how microsite conditions experienced by seeds in the field and light conditions in the laboratory influenced germination in 12 common annual plant species occurring in the understorey of the York gum-jam woodlands in southwest Western Australia. Specifically, we hypothesized that if germination promotes spatial niche differentiation, then we should observe species-specific germination responses to light. In addition, we hypothesized that species’ laboratory germination response may depend on the microsite conditions experienced by seeds while buried. We tested the laboratory germination response of seeds under diurnally fluctuating light and complete darkness, which were collected from microsites spanning local-scale environmental gradients known to influence community structure in this system. We found that seeds of 6 out of the 12 focal species exhibited significant positive germination responses to light, but that the magnitude of these responses varied greatly with the relative light requirement for germination ranging from 0.51 to 0.86 for these species. In addition, germination increased significantly across a gradient of canopy cover for two species, but we found little evidence to suggest that species’ relative light requirement for germination varied depending on seed bank microsite conditions. Our results suggest that variability in light availability may promote coexistence in this system and that the microsite conditions seeds experience in the intra-growing season period can further nuance species germination behaviour.

Controlling factors on the global distribution of a representative marine heterotrophic diazotroph phylotype (Gamma A)

Heterotrophic diazotrophs emerge as a potentially important contributor to the global marine N2 fixation, while the factors controlling their distribution are unclear. Here, we explored what controls the distribution of the most sampled heterotrophic diazotroph phylotype, Gamma A, in the global ocean. First, we analyzed the relationship between nifH-based Gamma A abundance and climatological biological and environmental conditions. The carrying capacity of Gamma A abundance increased with net primary production (NPP) and saturated when NPP reached ~400 mg C m−2 d−1. The reduction in Gamma A abundance from its carrying capacity was mostly related to low temperature, which possibly slowed the decomposition of organic matter, and high concentration of dissolved iron, to which the explanation was elusive but could result from the competition with autotrophic diazotrophs. Using a generalized additive model, these climatological factors together explained 41 % of the variance in the Gamma A abundance. Second, in additional to the climatological background, we found that mesoscale cyclonic eddies can substantially elevate Gamma A abundance, implying that Gamma A can respond to short-term features and benefit from stimulated primary production by nutrient inputs. Overall, our results suggest that the distribution of Gamma A is most likely determined by the supply of organic matters, not by those factors controlling autotrophic diazotrophs, and therefore insight a niche differentiation between the heterotrophic and autotrophic N2 fixation. More samplings on Gamma A and other heterotrophic diazotroph phylotypes are needed to better reveal the controlling mechanisms of heterotrophic N2 fixation in the ocean.

Climatic niche conservatism in a clade of disease vectors (Diptera: Phlebotominae)

Sandflies of the family Psychodidae show notable diversity in both disease vector status and climatic niche. Some species (in the subfamily Phlebotominae) transmit Leishmania parasites, responsible for the disease leishmaniasis. Other Psychodidae species do not. Psychodid species ranges can be solely tropical, confined to the temperate zones, or span both. Studying the relationship between the evolution of disease vector status and that of climatic niche affords an understanding not only of the climate conditions associated with the presence and species richness of Leishmania vectors, but also allows the study of the extent to which the climatic niches of psychodid flies are conserved, in a context with implications for global human health. We obtained observation site data, and associated climate data, for 223 psychodid species to understand which aspects of climate most closely predict distribution. Temperature and seasonality are strong determinants of species occurrence within the clade. We built a mitochondrial DNA phylogeny of Psychodidae, and found a positive relationship between pairwise genetic distance and climate niche differentiation, which indicates strong niche conservatism. This result is also supported by strong phylogenetic signals of metrics of climate differentiation. Finally, we used ancestral trait reconstruction to infer the tropicality (i.e., proportion of latitudinal range in the tropics minus the proportion of the latitudinal range in temperate areas) of ancestral species, and counted transitions to and from tropicality states, finding that tropical and temperate species respectively produced almost entirely tropical and temperate descendant species, a result consistent for vector and non-vector species. Taken together, these results imply that while vectors of Leishmania can survive in a variety of climates, their climate niches are strongly predicted by phylogeny.

Distribution Patterns and Ecological Niches of the Red-tongued Pit Viper (Gloydius ussuriensis) and the Central Asian Pit Viper (Gloydius intermedius) in Cheonmasan Mountain, South Korea

Studies on the distribution of species are important to understanding the interspecific ecological niche and habitat selection through geographic environmental information. Particularly, vipers in the same genus have been an important topic because they show differences in the preferred geographical environment, depending on the distance of the phylogenetic relationship. This study investigated the geographical environment of red-tongued pit vipers (Gloydius ussuriensis) and Central Asian pit vipers (Gloydius intermedius) in the mountainous area, Cheonmasan Mountain County Park, South Korea, from April 2012 to October 2014, to understand the relationships among their habitat characteristics and ecological niche. Red-tongued pit vipers mainly lived in low altitude, wet valley areas with a low solar reflectance, while Central Asian pit vipers inhabited high altitude, dry land with large amounts of sunshine. As a result, our study supports that the ecological niche of red-tongued pit vipers and Central Asian pit vipers, inhibiting in Cheonmasan Mountain was overlapped low according to the majority of geographical environmental variables. The differentiated diet preference might be took into consideration as one of the potential key factors to the ecological niche differentiation among two species.

Size-structured mating niche differentiation in the male-polyphenic mite Rhizoglyphus robini

Condition-dependent expression of alternative male morphs evolves when males of different sizes experience different mating niches, requiring different morphologies. Such mating niche differentiation can be due to competitive asymmetry between large and small males in contests over mating opportunities. Here, we tested the hypothesis that aggressive interactions among males cause size-structured mating niches in an acarid mite with condition-dependent male polyphenism: the bulb mite Rhizoglyphus robini. In this species, large males mature as armed fighters with enlarged legs, and small males as scramblers without modified legs. We staged experimental dyadic contests over a mating opportunity between either a pair of fighter males, or a fighter and a scrambler male. We predicted that the larger male would have a higher likelihood of mating first in contests among fighters, that the fighter male would have a higher likelihood of mating first in fighter-scrambler contests, that fighters would have a higher likelihood of interrupting ongoing copulations if they are larger than their mating rival, and that copulations in the presence of a fighter rival therefore last shorter than copulations with a scrambler rival present. We found that in contests among fighters, the larger male had a higher probability of mating first. In contests among a fighter and scrambler, the fighter male was more likely to mate first regardless of the body size difference between the contestants. Ongoing copulations were only rarely interrupted by the rival male (always by a fighter), and the probability of interruption did not depend on the body size difference between the mating male and its rival. Copulations lasted shorter in the presence of a rival fighter, but this effect was not attributable to interruption of copulations. We conclude that the fighting niche is particularly accessible for large males, as larger males have a higher probability of winning pre-copulatory contests. Such mating niche differentiation likely contributes to evolutionary maintenance of condition-dependent male polyphenism, where small males are forced to adopt an alternative mating tactic and hence develop a dedicated morphology.

Early-Middle Ordovician cephalopods from Ny Friesland, Spitsbergen – a pelagic fauna with Laurentian affinities

The collection of cephalopods from eight sampling horizons within the Olenidsletta Member, Valhallfonna Formation, Floian–Dapingian, from Profilstranda and nearby Profilbekken, Ny Friesland, Spitsbergen, resulted in the detection of 31 species, 20 genera, and 12 families from the Ellesmerocerida, Endocerida, Riocerida, Dissidocerida, Orthocerida, Tarphycerida, and Oncocerida. Of these, five genera (Ethanoceras gen. nov., Hinlopoceras gen. nov., Nyfrieslandoceras gen. nov., Olenidslettoceras gen. nov., Svalbardoceras gen. nov.) and 19 species (Bactroceras fluvii sp. nov., Buttsoceras buldrebreenense sp. nov., Cycloplectoceras hinlopense sp. nov., Cyclostomiceras profilstrandense sp. nov., Deltoceras beluga sp. nov., Eosomichelinoceras borealis sp. nov., Ethanoceras solitudines gen. et sp. nov., Hemichoanella occulta sp. nov., Hinlopoceras tempestatis gen. et sp. nov., H. venti gen. et sp. nov., Lawrenceoceras ebenus sp. nov., L. larus sp. nov., Litoceras profilbekkenense sp. nov., Nyfrieslandoceras bassleroceroides gen. et sp. nov., Olenidslettoceras farmi gen. et sp. nov., Protocycloceras minor sp. nov., Proterocameroceras valhallfonnense sp. nov., Svalbardoceras sterna gen. et sp. nov., S. skua gen. et sp. nov.) are new. The diagnoses of the Cyptendoceratidae, Bactroceratidae and of Deltoceras Hyatt, 1894 are emended. Well preserved early growth stages in several species are remarkable. Turnover between the sampling horizons and between sampling intervals is high. The differences in composition, diversity and evenness of the assemblages are interpreted as reflecting changing depth and oxygenation depositional bottom conditions. The co-occurrence of endemic and cosmopolitan species is interpreted as resulting from a high vertical niche differentiation and from eustatically generated lateral shifts of facies zones. Based on calculations of phragmocone implosion depths, depositional depths of 50–130 m are plausible for the Olenidsletta Member, supporting independent evidence from biomarker signatures. Several cephalopod species of the Olenidsletta Member represent odd mosaics of morphological features of previously known cephalopods which cannot be unambiguously assigned to one of the existing cephalopod higher taxa. Results from a cladistic analysis shed new light on the early evolution of the Oncocerida and Orthocerida.

Re-evaluation of the phylogenetic diversity and global distribution of the genus Candidatus Accumulibacter

Candidatus Accumulibacter was the first microorganism identified as a polyphosphate-accumulating organism (PAO), important for phosphorus removal from wastewater. This genus is diverse, and the current phylogeny and taxonomic framework appears complicated, with the majority of publicly available genomes classified as Candidatus Accumulibacter phosphatis, despite notable phylogenetic divergence. The ppk1 marker gene allows for a finer scale differentiation into different types and clades, nevertheless taxonomic assignments remain confusing and inconsistent across studies. Therefore, a comprehensive re-evaluation is needed to establish a common understanding of this genus, both in terms of naming and basic conserved physiological traits. Here, we provide this re-assessment using a comparison of genome, ppk1, and 16S rRNA gene-based approaches from comprehensive datasets. We identified 15 novel species, along with the well-known Ca. A. phosphatis, Ca. A. deltensis and Ca. A. aalborgensis. To compare the species in situ, we designed new species-specific FISH probes and revealed their morphology and arrangement in activated sludge. Based on the MiDAS global survey, Ca. Accumulibacter species were widespread in WWTPs with phosphorus removal, indicating the process design as a major driver for their abundance. Genome mining for PAO related pathways and FISH-Raman microspectroscopy confirmed the potential for the PAO metabolism in all Ca. Accumulibacter species, with detection in situ of the typical PAO storage polymers. Genome annotation further revealed fine-scale differences in the nitrate/nitrite reduction pathways. This provides insights into the niche differentiation of these lineages, potentially explaining their coexistence in the same ecosystem while contributing to overall phosphorus and nitrogen removal.

Microbial Community Response to Polysaccharide Amendment in Anoxic Hydrothermal Sediments of the Guaymas Basin

Organic-rich, hydrothermal sediments of the Guaymas Basin are inhabited by diverse microbial communities including many uncultured lineages with unknown metabolic potential. Here we investigated the short-term effect of polysaccharide amendment on a sediment microbial community to identify taxa involved in the initial stage of macromolecule degradation. We incubated anoxic sediment with cellulose, chitin, laminarin, and starch and analyzed the total and active microbial communities using bioorthogonal non-canonical amino acid tagging (BONCAT) combined with fluorescence-activated cell sorting (FACS) and 16S rRNA gene amplicon sequencing. Our results show a response of an initially minor but diverse population of Clostridia particularly after amendment with the lower molecular weight polymers starch and laminarin. Thus, Clostridia may readily become key contributors to the heterotrophic community in Guaymas Basin sediments when substrate availability and temperature range permit their metabolic activity and growth, which expands our appreciation of the potential diversity and niche differentiation of heterotrophs in hydrothermally influenced sediments. BONCAT-FACS, although challenging in its application to complex samples, detected metabolic responses prior to growth and thus can provide complementary insight into a microbial community’s metabolic potential and succession pattern. As a primary application of BONCAT-FACS on a diverse deep-sea sediment community, our study highlights important considerations and demonstrates inherent limitations associated with this experimental approach.