Understanding Reward Dysfunction in Bipolar Affective Disorder through Behavioural, Cognitive and Neurobiological Changes

Bipolar disorder, like many neuropsychiatric conditions, can be studied from a number of perspectives; from observation of behaviour, to study of cognitive dysfunction, through to changes at the molecular and genetic level. A consequence of this way of working is that there is inadequate communication between different levels of analysis, such that insufficient thought is given to whether a theoretical model derived from behavioural work fits with neurobiological data, and vice versa. Such limitations represent a key limiting factor in successful translation. Therefore, this paper takes a dominant theoretical model of bipolar disorder, based on that by Gray (1994) and developed by Alloy et al., (2015) as a basis to propose that the foundational pathology in bipolar is reward hypersensitivity, and to review how recent diverse neurobiological, cognitive and behavioural findings fit with this understanding. Executive Function deficits, partially derived from heritable structural changes are suggested as a foundation through which reward hypersensitivity develops to disorder, and CANA1C polymorphism-induced hyperactivity, further serves to drive the system towards reward seeking goals, through interaction with dopaminergic systems. This action is supplemented by a genetic predisposition for cognitive regulatory dysfunction, leading to improper modulation of emotive and reward networks. Specifically, deficits in top-down limbic modulation leads to behaviours disproportionally driven by limbic and reward circuitry; this pathology strengths over time through use. This therefore eventually results in substantial regional disconnect, reflected in epigenetic changes to neurotransmitters and observable histological changes.

Review on the Development and Applications of Medicinal Plant Genomes

With the development of sequencing technology, the research on medicinal plants is no longer limited to the aspects of chemistry, pharmacology, and pharmacodynamics, but reveals them from the genetic level. As the price of next-generation sequencing technology becomes affordable, and the long-read sequencing technology is established, the medicinal plant genomes with large sizes have been sequenced and assembled more easily. Although the review of plant genomes has been reported several times, there is no review giving a systematic and comprehensive introduction about the development and application of medicinal plant genomes that have been reported until now. Here, we provide a historical perspective on the current situation of genomes in medicinal plant biology, highlight the use of the rapidly developing sequencing technologies, and conduct a comprehensive summary on how the genomes apply to solve the practical problems in medicinal plants, like genomics-assisted herb breeding, evolution history revelation, herbal synthetic biology study, and geoherbal research, which are important for effective utilization, rational use and sustainable protection of medicinal plants.

Exploratory growth in Streptomyces venezuelae involves a unique transcriptional program, enhanced oxidative stress response, and profound acceleration in response to glycerol

Exploration is a recently discovered mode of growth and behaviour exhibited by some Streptomyces species that is distinct from their classical sporulating life cycle. While much has been uncovered regarding initiating environmental conditions and the phenotypic outcomes of exploratory growth, how this process is coordinated at a genetic level remains unclear. We used RNA-sequencing to survey global changes in the transcriptional profile of exploring cultures over time in the model organism Streptomyces venezuelae. Transcriptomic analyses revealed widespread changes in gene expression impacting diverse cellular functions. Investigations into differentially expressed regulatory elements revealed specific groups of regulatory factors to be impacted, including the expression of several extracytoplasmic function (ECF) sigma factors, second messenger signalling pathways, and members of the whiB-like (wbl) family of transcription factors. Dramatic changes were observed among primary metabolic pathways, especially among respiration-associated genes and the oxidative stress response; enzyme assays confirmed that exploring cultures exhibit an enhanced oxidative stress response compared with classically growing cultures. Changes in expression of the glycerol catabolic genes in S. venezuelae led to the discovery that glycerol supplementation of the growth medium promotes a dramatic acceleration of exploration. This effect appears to be unique to glycerol as an alternative carbon source and this response is broadly conserved across other exploration-competent species.

Morphological and Genetic Characterization of Local Maize Accessions from Emilia Romagna Region, Italy

Italian maize germplasm is particularly rich in local materials and each region is characterized by the presence of peculiar local varieties deriving from centuries of adaptation, selection and cultivation. While the introduction of hybrids, during the 1950s, led to the disappearing of many of these varieties, some have been maintained in cultivation by farmers, frequently in marginal areas, as a kind of family heritage. Local varieties were identified throughout field surveys carried out in recent years. The discovery of a traditional popcorn variety over the most common flint and semi-flint materials used for production of polenta was interesting. Since these varieties have never been adequately described and reported in scientific literature, this study was aimed to solve this lack of knowledge on recently discovered local maize populations. Characterization represents the first step of a process focused on the preservation and possible exploitation of important genetic resources. Traditional materials are a useful reservoir of genes for adaptation to local conditions and climate changes. Adequate breeding programs can use such germplasm for developing new and more resilient varieties. These local materials have been characterized at the morphological level highlighting plant, ear and kernel differences. Genetic characterization, carried out on 455 individuals by the use of 10 SSR markers, revealed 62 different alleles ranging from four for markers phi127, phi076 and phi084 to nine for marker p-bnlg176. The landraces are well distinguishable at genetic level since 40% of genetic variability is present among accessions. Five landraces are characterized by the presence of private alleles and heterozygosity levels are generally good. These findings support the possibility to correctly preserve local materials through in situ conservation. Phylogenetic analysis evidenced the presence of varietal clusters, the clearest one formed by three red-pigmented accessions. STRUCTURE analysis revealed that five landraces have a well-defined genetic attribution while the remaining two (EMR04-Mais Rosso di Rasora and EMR10-Mais del Principe di Scavolino) are both constituted by two different backgrounds.

Alternations of fecal microbes and lung tissue microbes in Lung Cancer patients is more consistent than that of sputum.

Microbiome in the human body environment is related to the occurrence of a variety of disease phenotypes. Recent studies discovered that lung is an open organism with in touch of air and microbe in it, and the presence of some microbes in lung cancer tissues proved that there are many microbes in lungs. In this project, we collected lung tissue, feces and sputum from three Bioprojects of NCBI related to lung cancer (LC). Each project contains LC cases and lung normal (LN) controls. Those three projects contain a total of 339 samples of 16s rRNA sequencing data. By analyzing the composition of microbes in the three environments, and predicting their functions we found that compared with sputum, the ecological environment of fecal microbe is closer to tissue microbes in terms of evolutionary relationship, indicating that the impact of feces on tissue microbes is greater than that of the sputum. We used Picrust2 to predict the differential microbe function of lung cancer (LC) and the control (Lung Normal, LN) groups in the three environments, and found that at the microbe genetic level, compared to feces and sputum, sputum and tissues, feces and tissues have more common Differential genes, at the level of differential enzyme genes and differential pathways, feces and tissues have more common differences compared to feces and sputum, sputum and tissues. Our results showed that the similarity of feces and tissue microbiome is closer than the similarity of sputum and feces microbe. Through Spearman correlation analysis based on the relative abundance of predicted pathways and the relative abundance of genus classified by LDA analysis as marker diseases and healthy samples. The results indicated that the activation of marker genus in sputum and feces and significantly changed pathways has an opposite trend, and there are many pathways contributing to glycolysis are correlated with marker genus. Patients with LC has potential to regulate the microbe composition of feces, tissues and sputum by regulating metabolism.

Equus roundworms (Parascaris univalens) are undergoing rapid divergence due to host and environment factors

Background The evolution of parasites is often directly affected by the host's environment. Studies on the evolution of the same parasites in different hosts are extremely attractive and highly relevant to our understanding of divergence and speciation. Methods Here we performed whole genome sequencing of Parascaris univalens from different Equus hosts (horses, zebras and donkeys). Phylogenetic and selection analysis was performed to study the divergence and adaptability of P. univalens. Results At the genetic level, multiple lines of evidence support that P. univalens were mainly separated into two clades (Horse-derived and Zebra & Donkey-derived). This divergence began at 300-1000 years ago, and we found that most of the key enzymes related to glycolysis were under strong positive selection in zebra & donkey-derived roundworms, but lipid related metabolism system was under positive selection in the horse-derived roundworms, indicating that the adaptive evolution of metabolism may drive the divergence in past few centuries. In addition, we found that some drug-related genes have a significantly higher degree of selection in different populations. Conclusions This work reports evidence that the host’s diet drives the divergence of roundworms for the first time, and also supports that divergence is a continuous and dynamic process, and continuous monitoring of the effects of differences in nutritional and drug history on rapid evolution of roundworms are conducive to further understanding host-parasite interactions.

The General Factor of Personality (GFP) and Vocational Interests: a Test of Social Effectiveness at the Behavioral and Genetic Level

Previous studies have examined how personality models (e.g., Big Five, HEXACO) relate to vocational interests. We adopt a novel approach by testing the associations between personality and vocational interests from the perspective of the general factor of personality (GFP). One interpretation of the GFP is that it reflects social effectiveness. Based on this interpretation, we predicted that the GFP is particularly related to interest in social jobs because people generally tend to be attracted to activities in which they perform well. To test this, we used four large data sets: the Professional Worker Career Experience Survey (study 1a; N = 752), OpenPsychometrics.org (study 1b, N = 108,209), Project Talent (study 2; N = 81,130), and the National Merit Twin Study (study 3: N = 1536 in 768 twin pairs). In each sample, we presented the direct associations as well as the results after using control variables (gender and cognitive ability). In study 1a and 1b, the GFP particularly related to interest in social and enterprising occupations. In study 2, the GFP related to interest in working with people and was also associated with a range of occupational scales involving social aspects. In study 3, the GFP only showed a consistent relation with social interests. This association was present at the phenotypical as well as genetic level. Notwithstanding some variation in findings across the different studies, the overall pattern seems to be in line with the notion that the GFP is positively associated with the preference for more socially laden jobs.

Cortex: Circuitry, Networks, and Function

Functional magnetic resonance imaging (fMRI) has revolutionized the understanding of the functional and structural architecture of the brain and serves as a lens for reviewing the complex cortical circuitry and networks of the cerebral cortex. The human brain is a complex information processing system whose proper functioning depends on the organization of its processing units. The scale of these processing units spans multiple levels from the genetic level to the systems level.

Some results of the study of alfalfa and meadow clover samples created by biotechnology methods

The conditions for creating alfalfa samples MN-2 (from the Selena variety) and P-67 (from the Lugovaya variety) with increased resistance to Fusarium pathogens using the method of gamete selection are described. The method is based on the selection of gametes in vivo under the influence of a selective factor (culture filtrate) introduced into the generative organs at the early stages of their development using vacuum infiltration. The method was developed in the biotechnology department of the V.N. V.R. Williams. The accessions are included in the breeding process and are currently the accessory varieties. In order to identify differences at the genetic level between the created varieties and the original forms, a comparative analysis was carried out using 2 types of molecular markers based on the PCR method. DNA polymorphism was detected using SRAP primers, which may indicate a change in the structure of genes associated with economic and biological traits. Research is ongoing. When growing under the conditions of a selection and greenhouse complex of acid-tolerant plants of meadow clover, created using cellular technologies in vitro, the infestation by powdery mildew of 120 acid-tolerant plants was studied. No signs of damage were found in 10% of plants. The largest number of affected plants (36.7%) had a score of 3. It was found that a high infestation with powdery mildew (scores 4 and 5) significantly reduces the number of inflorescences in the bush to 83.4 and 75.7%, respectively. Therefore, in further studies to create a population of acid-tolerant plants, the genotypes of meadow clover were used without signs and with a low score of powdery mildew damage.

Genetic and phenotypic analyses reveal major quantitative loci associated to fruit size and shape traits in a non-flat peach collection (P. persica L. Batsch)

Fruit size and shape are critical agronomical and pomological attributes and prime targets in peach breeding programs. Apart from the flat peach type, a Mendelian trait well-characterized at the genetic level, ample diversity of fruit size and shapes is present across peach germplasms. Nevertheless, knowledge of the underlying genomic loci remains limited. In this work, fruit size and shape were assessed in a collection of non-flat peach accessions and selections, under controlled fruit load conditions. The architecture of these traits was then dissected by combining association and linkage mapping, revealing a major locus on the proximal end of chromosome 6 (qSHL/Fs6.1) explaining a large proportion of phenotypic variability for longitudinal shape and also affecting fruit size. A second major locus for fruit longitudinal shape (qSHL5.1), probably also affecting fruit size, was found co-localizing at locus G, suggesting pleiotropic effects of peach/nectarine traits. An additional QTL for fruit longitudinal shape (qSHL6.2) was identified in the distal end of chromosome 6 in a cross with an ornamental double-flower peach and co-localized with the Di2 locus, controlling flower morphology. Besides assisting breeding activities, knowledge of loci controlling fruit size and shape paves the way for more in-depth studies aimed at the identification of underlying genetic variant(s).