Near-infrared tissue oximetry and digital image analysis: quantification of renal ischaemia in real time during partial nephrectomy

2011 ◽  
Vol 109 (2) ◽  
pp. 311-315 ◽  
Author(s):  
Arthur A. Caire ◽  
Xavier Alvarez ◽  
Sarah Conley ◽  
Alton Sartor ◽  
Benjamin R. Lee
2021 ◽  
Author(s):  
Edina Csákvári ◽  
Melinda Halassy ◽  
Attila Enyedi ◽  
Ferenc Gyulai ◽  
József Berke

Abstract BackgroundEinkorn wheat (Triticum monococcum L. subs. monococcum) plays an increasingly important role in agriculture, promoted by organic farming. Although the number of comparative studies about modern and ancient types of wheats are increasing, there are still some knowledge gaps. The aim of the present study was to compare ancient, traditional and modern wheats using novel methods, including field study, laboratory stress experiment and vision-based digital image analysis. The yield and grain quality parameters based on the field experiment were measured with a near-infrared optical laboratory analyser. In order to predict the aboveground biomass production under nutrient deficiency and drought stress, a controlled experiment was set up in a growth chamber. Processing was performed by image segmentation using the Adobe Photoshop CC 20.04.4 Camera RAW 11.2 plug-in. Digital image parameters were determined with the open source software ImageJ and expressed in pixels of projected area, perimeter, bounding rectangle and Feret’s diameter.ResultsWe presented a fast, real-time, non-destructive and low-cost method for estimation of wheat quality. Based on the results, digital area is suitable to estimate aboveground biomass. Digital area outperformed other digital variables in biomass prediction in relation to stress, but height and Feret’s diameter better correlated with yield and grain quality parameters. The developed technique is easy to use to assess the growth and health status of plants. An RGB digital camera is easy to operate and image acquisition can be done at will, meanwhile conventional laboratory instruments are relatively expensive, very expert-intensive and time consuming.ConclusionOur study showed that digital image analysis could be a viable alternate means for the real-time estimation of aboveground biomass and for predicting yield and grain quality parameters. We suggest that the combination of various vision-based methods could improve the estimation of wheat performance in a non-destructive and real-time way. The results also demonstrated that modern wheats had better yield production and grain quality compared to einkorn wheats, but the latter were not far behind, thus the cultivation of various species could provide a diverse and sustainable agriculture.


2014 ◽  
Vol 81 (4) ◽  
pp. 1267-1273 ◽  
Author(s):  
Sebastian Schlafer ◽  
Javier E. Garcia ◽  
Matilde Greve ◽  
Merete K. Raarup ◽  
Bente Nyvad ◽  
...  

ABSTRACTpH in the extracellular matrix of bacterial biofilms is of central importance for microbial metabolism. Biofilms possess a complex three-dimensional architecture characterized by chemically different microenvironments in close proximity. For decades, pH measurements in biofilms have been limited to monitoring bulk pH with electrodes. Although pH microelectrodes with a better spatial resolution have been developed, they do not permit the monitoring of horizontal pH gradients in biofilms in real time. Quantitative fluorescence microscopy can overcome these problems, but none of the hitherto employed methods differentiated accurately between extracellular and intracellular microbial pH and visualized extracellular pH in all areas of the biofilms. Here, we developed a method to reliably monitor extracellular biofilm pH microscopically with the ratiometric pH-sensitive dye C-SNARF-4, choosing dental biofilms as an example. Fluorescent emissions of C-SNARF-4 can be used to calculate extracellular pH irrespective of the dye concentration. We showed that at pH values of <6, C-SNARF-4 stained 15 bacterial species frequently isolated from dental biofilm and visualized the entire bacterial biomass inin vivo-grown dental biofilms with unknown species composition. We then employed digital image analysis to remove the bacterial biomass from the microscopic images and adequately calculate extracellular pH values. As a proof of concept, we monitored the extracellular pH drop inin vivo-grown dental biofilms fermenting glucose. The combination of pH ratiometry with C-SNARF-4 and digital image analysis allows the accurate monitoring of extracellular pH in bacterial biofilms in three dimensions in real time and represents a significant improvement to previously employed methods of biofilm pH measurement.


2021 ◽  
Vol 13 (21) ◽  
pp. 12005
Author(s):  
Edina Csákvári ◽  
Melinda Halassy ◽  
Attila Enyedi ◽  
Ferenc Gyulai ◽  
József Berke

Einkorn wheat (Triticum monococcum L. ssp. monococcum) plays an increasingly important role in agriculture, promoted by organic farming. Although the number of comparative studies about modern and ancient types of wheats is increasing, there are still some knowledge gaps about the nutritional and health benefit differences between ancient and modern bread wheats. The aim of the present study was to compare ancient, traditional and modern wheat cultivars—including a field study and a laboratory stress experiment using vision-based digital image analysis—and to assess the feasibility of imaging techniques. Our study shows that modern winter wheat had better yield and grain quality compared to einkorn wheats, but the latter were not far behind; thus the cultivation of various species could provide a diverse and sustainable agriculture which contributes to higher agrobiodiversity. The results also demonstrate that digital image analysis could be a viable alternate method for the real-time estimation of aboveground biomass and for predicting yield and grain quality parameters. Digital area outperformed other digital variables in biomass prediction in relation to drought stress, but height and Feret’s diameter better correlated with yield and grain quality parameters. Based on these results we suggest that the combination of various vision-based methods could improve the performance estimation of modern and ancient types of wheat in a non-destructive and real-time manner.


2000 ◽  
Vol 10 (2) ◽  
pp. 7-9
Author(s):  
Yaser Natour ◽  
Christine Sapienza ◽  
Mark Schmalz ◽  
Savita Collins

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