A Novel Alveolate in Bivalves with Chemosynthetic Bacteria Inhabiting Deep-Sea Methane Seeps

2013 ◽  
Vol 60 (2) ◽  
pp. 158-165 ◽  
Author(s):  
Fumiya Noguchi ◽  
Masaru Kawato ◽  
Takao Yoshida ◽  
Yoshihiro Fujiwara ◽  
Katsunori Fujikura ◽  
...  

2020 ◽  
Vol 7 ◽  
Author(s):  
Phillip J. Turner ◽  
Bernard Ball ◽  
Zoie Diana ◽  
Andrea Fariñas-Bermejo ◽  
Ian Grace ◽  
...  


Author(s):  
Benjamin Kidder Hodges

Mirages seen at sea have a long history of being interpreted as distant islands and mythological realms. Hot and cool pockets of air refracting light can make boats and islands appear as if floating in air. These atmospheric visions can be studied as physical phenomena and as cultural imaginaries, an extension of what Philip Hayward has called the aquapelagic imaginary. In alliance with Donna Haraway’s mythology-inspired Chthulucene, this article will use the Chinese folklore of the shen (蜃) (‘clam-monster’) to consider ecological issues around deep sea mining. In the ancient etiology of the shen, its breath was thought responsible for visions of Penglai, the fabled island home to the Eight Immortals believed to lie somewhere in the Yellow Sea. The search for Penglai and its rumored elixir of life has now been supplanted by exploration for methane, a largely untapped fossil fuel seeping up from the ocean floor. The clams and multi-species communities that cluster around these emissions, alongside mythological sea creatures, give shape to changing affects and atmospheres on the horizon.



Microbiome ◽  
2021 ◽  
Vol 9 (1) ◽  
Author(s):  
Kun Zhou ◽  
Ying Xu ◽  
Rui Zhang ◽  
Pei-Yuan Qian

Abstract Background Deep-sea animals in hydrothermal vents often form endosymbioses with chemosynthetic bacteria. Endosymbionts serve essential biochemical and ecological functions, but the prokaryotic viruses (phages) that determine their fate are unknown. Results We conducted metagenomic analysis of a deep-sea vent snail. We assembled four genome bins for Caudovirales phages that had developed dual endosymbiosis with sulphur-oxidising bacteria (SOB) and methane-oxidising bacteria (MOB). Clustered regularly interspaced short palindromic repeat (CRISPR) spacer mapping, genome comparison, and transcriptomic profiling revealed that phages Bin1, Bin2, and Bin4 infected SOB and MOB. The observation of prophages in the snail endosymbionts and expression of the phage integrase gene suggested the presence of lysogenic infection, and the expression of phage structural protein and lysozyme genes indicated active lytic infection. Furthermore, SOB and MOB appear to employ adaptive CRISPR–Cas systems to target phage DNA. Additional expressed defence systems, such as innate restriction–modification systems and dormancy-inducing toxin–antitoxin systems, may co-function and form multiple lines for anti-viral defence. To counter host defence, phages Bin1, Bin2, and Bin3 appear to have evolved anti-restriction mechanisms and expressed methyltransferase genes that potentially counterbalance host restriction activity. In addition, the high-level expression of the auxiliary metabolic genes narGH, which encode nitrate reductase subunits, may promote ATP production, thereby benefiting phage DNA packaging for replication. Conclusions This study provides new insights into phage–bacteria interplay in intracellular environments of a deep-sea vent snail.



2020 ◽  
Vol 159 ◽  
pp. 103251
Author(s):  
Zhe-Yu Lin ◽  
Hsuan-Wien Chen ◽  
Hsing-Juh Lin


2021 ◽  
Author(s):  
Oliver S. Ashford ◽  
Shuzhe Guan ◽  
Dante Capone ◽  
Katherine Rigney ◽  
Katelynn Rowley ◽  
...  
Keyword(s):  
Deep Sea ◽  


Zootaxa ◽  
2020 ◽  
Vol 4885 (4) ◽  
pp. 560-578
Author(s):  
SERGIO I. SALAZAR-VALLEJO

The discovery of four undescribed flabelligerid species from deep-water in Pacific Costa Rica resulted in the restriction of Diplocirrus Haase, 1915. As currently understood, Diplocirrus and Pherusa Oken, 1807 are separated after their morphological pattern. The species belonging in Diplocirrus have two types of branchiae, poorly developed cephalic cages and multiarticulate neurochaetae, whereas Pherusa species have branchiae of one type, well-developed cephalic cages and completely anchylosed neurochaetae. Benthic sampling and processing usually damage cephalic cages and if chaetae are completely broken, one could regard specimens without them, when they actually have it, but lost after sieving. Sampling using Alvin deep-sea submarine at methane seeps off Costa Rica resulted in some well-preserved specimens, and some of them fall between these two genera because they have well developed cephalic cages, and multiarticulate neurochaetae. Saphobranchia Chamberlin, 1919, with Stylarioides longisetosa von Marenzeller, 1890, as type species, is herein reinstated for some species previously included in Diplocirrus, restricted. The transferred species, including three ones newly described herein, have branchiae of a single type, long cephalic cage and body chaetae, and neurochaetae basally anchylosed and medially and distally articulated; some species currently included in Diplocirrus described from Arctic or deep water sediments are transferred into it. A key to identify all species in Saphobranchia, and another key to identify species in the restricted Diplocirrus are also included. The three new Saphobranchia species are S. canela n. sp., S. ilys n. sp. and S. omorpha n. sp. The fourth species belongs in Lamispina Salazar-Vallejo, 2014, and it is herein described as L. polycerata n. sp. after the presence of some long papillae along anterior margin of chaetiger 1. 



2014 ◽  
Vol 5 ◽  
Author(s):  
Amir Sapir ◽  
Adler R. Dillman ◽  
Stephanie A. Connon ◽  
Benjamin M. Grupe ◽  
Jeroen Ingels ◽  
...  
Keyword(s):  
Deep Sea ◽  


2009 ◽  
Vol 56 (2) ◽  
pp. 283-293 ◽  
Author(s):  
Antonie Haas ◽  
Crispin T.S. Little ◽  
Heiko Sahling ◽  
Gerhard Bohrmann ◽  
Tobias Himmler ◽  
...  
Keyword(s):  
Deep Sea ◽  




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