scholarly journals The nematodePristionchus pacificusas a model system for integrative studies in evolutionary biology

2013 ◽  
Vol 22 (9) ◽  
pp. 2380-2393 ◽  
Author(s):  
Ralf J. Sommer ◽  
Angela McGaughran
2020 ◽  
Vol 287 (1940) ◽  
pp. 20202538
Author(s):  
Rowan A. Lymbery ◽  
Jacob D. Berson ◽  
Jonathan P. Evans

The capacity for parents to influence offspring phenotypes via nongenetic inheritance is currently a major area of focus in evolutionary biology. Intriguing recent evidence suggests that sexual interactions among males and females, both before and during mating, are important mediators of such effects. Sexual interactions typically extend beyond gamete release, involving both sperm and eggs, and their associated fluids. However, the potential for gamete-level interactions to induce nongenetic parental effects remains under-investigated. Here, we test for such effects using an emerging model system for studying gamete interactions, the external fertilizer Mytilus galloprovincialis . We employed a split-ejaculate design to test whether exposing sperm to egg-derived chemicals (ECs) from a female would affect fertilization rate and offspring viability when those sperm were used to fertilize a different female's eggs. We found separate, significant effects of ECs from non-fertilizing females on both fertilization rate and offspring viability. The offspring viability effect indicates that EC-driven interactions can have nongenetic implications for offspring fitness independent of the genotypes inherited by those offspring. These findings provide a rare test of indirect parental effects driven exclusively by gamete-level interactions, and to our knowledge the first evidence that such effects occur via the gametic fluids of females.


2017 ◽  
Vol 7 (5) ◽  
pp. 20160133 ◽  
Author(s):  
Melinda A. Zeder

One of the challenges in evaluating arguments for extending the conceptual framework of evolutionary biology involves the identification of a tractable model system that allows for an assessment of the core assumptions of the extended evolutionary synthesis (EES). The domestication of plants and animals by humans provides one such case study opportunity. Here, I consider domestication as a model system for exploring major tenets of the EES. First I discuss the novel insights that niche construction theory (NCT, one of the pillars of the EES) provides into the domestication processes, particularly as they relate to five key areas: coevolution, evolvability, ecological inheritance, cooperation and the pace of evolutionary change. This discussion is next used to frame testable predictions about initial domestication of plants and animals that contrast with those grounded in standard evolutionary theory, demonstrating how these predictions might be tested in multiple regions where initial domestication took place. I then turn to a broader consideration of how domestication provides a model case study consideration of the different ways in which the core assumptions of the EES strengthen and expand our understanding of evolution, including reciprocal causation, developmental processes as drivers of evolutionary change, inclusive inheritance, and the tempo and rate of evolutionary change.


2019 ◽  
Author(s):  
Nicole Gruenheit ◽  
Amy Baldwin ◽  
Balint Stewart ◽  
Sarah Jaques ◽  
Thomas Keller ◽  
...  

AbstractGenomes can be sequenced with relative ease, but ascribing gene function remains a major challenge. Genetically tractable model systems are crucial to meet this challenge. One powerful model is the social amoebaDictyostelium discoideum, a eukaryotic microbe widely used to study diverse questions in cell, developmental and evolutionary biology. However, its utility is hampered by the inefficiency with which sequence, transcriptome or proteome variation can be linked to phenotype. To address this, we have developed methods (REMI-seq) to (1) generate a near genome-wide resource of individual mutants (2) allow large-scale parallel phenotyping. We demonstrate that integrating these resources allows novel regulators of cell migration, phagocytosis and macropinocytosis to be rapidly identified. Therefore, these methods and resources provide a step change for high throughput gene discovery in a key model system, and the study of genes affecting traits associated with higher eukaryotes.


Biosemiotics ◽  
2021 ◽  
Author(s):  
Terrence W. Deacon

AbstractTo explore how molecules became signs I will ask: “What sort of process is necessary and sufficient to treat a molecule as a sign?” This requires focusing on the interpreting system and its interpretive competence. To avoid assuming any properties that need to be explained I develop what I consider to be a simplest possible molecular model system which only assumes known physics and chemistry but nevertheless exemplifies the interpretive properties of interest. Three progressively more complex variants of this model of interpretive competence are developed that roughly parallel an icon-index-symbol hierarchic scaffolding logic. The implication of this analysis is a reversal of the current dogma of molecular and evolutionary biology which treats molecules like DNA and RNA as the original sources of biological information. Instead I argue that the structural characteristics of these molecules have provided semiotic affordances that the interpretive dynamics of viruses and cells have taken advantage of. These molecules are not the source of biological information but are instead semiotic artifacts onto which dynamical functional constraints have been progressively offloaded during the course of evolution.


genesis ◽  
2014 ◽  
Vol 52 (3) ◽  
pp. 186-192 ◽  
Author(s):  
Hiroyuki Koga ◽  
Yoshiaki Morino ◽  
Hiroshi Wada

2018 ◽  
Vol 6 (14) ◽  
pp. 69
Author(s):  
Mariana Benitez

The fields of agroecology and ecological evolutionary developmental biology  (eco-evo-devo) have been performing somewhat parallel efforts of synthesis. On the one hand, agroecology has incorporated knowledge from different disciplinary sources, among which are of course ecology, agronomy and, in a  less extent, other scientific disciplines. It has also embraced local and traditional agricultural knowledge. On the other hand, during the last decades a large effort has aimed to integrate diverse theories, evidence and tools from ecology, developmental and evolutionary biology in what has been called eco-evo-devo.


2008 ◽  
Vol 26 (3) ◽  
pp. 623-629 ◽  
Author(s):  
Y. Yamanoue ◽  
M. Miya ◽  
K. Matsuura ◽  
S. Miyazawa ◽  
N. Tsukamoto ◽  
...  

2012 ◽  
Vol 64 (1) ◽  
pp. 159-174 ◽  
Author(s):  
A. Tarasjev ◽  
S. Avramov ◽  
Danijela Miljkovic

Evolutionary studies on the dwarf bearded iris, Iris pumila L., a perennial clonal monocot with hermaphroditic enthomophylous flowers, have been conducted during the last three decades on plants and populations from the Deliblato Sands in Serbia. In this review we discuss the main advantages of this model system that have enabled various studies of several important genetic, ecological, and evolutionary issues at different levels of biological organization (molecular, physiological, anatomical, morphological and population). Based on published research and its resonance in international scientific literature, we present the main findings obtained from these studies, and discuss possible directions for further research.


2020 ◽  
Vol 51 (1) ◽  
pp. 533-560 ◽  
Author(s):  
Joseph A. Tobias ◽  
Jente Ottenburghs ◽  
Alex L. Pigot

The origin, distribution, and function of biological diversity are fundamental themes of ecology and evolutionary biology. Research on birds has played a major role in the history and development of these ideas, yet progress was for many decades limited by a focus on patterns of current diversity, often restricted to particular clades or regions. Deeper insight is now emerging from a recent wave of integrative studies combining comprehensive phylogenetic, environmental, and functional trait data at unprecedented scales. We review these empirical advances and describe how they are reshaping our understanding of global patterns of bird diversity and the processes by which it arises, with implications for avian biogeography and functional ecology. Further expansion and integration of data sets may help to resolve longstanding debates about the evolutionary origins of biodiversity and offer a framework for understanding and predicting the response of ecosystems to environmental change.


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