scholarly journals Deep learning differentiates between healthy and diabetic mouse ears from optical coherence tomography angiography images

2021 ◽  
Author(s):  
Martin Pfister ◽  
Hannes Stegmann ◽  
Kornelia Schützenberger ◽  
Bhavapriya Jasmin Schäfer ◽  
Christine Hohenadl ◽  
...  
Keyword(s):  
Optical Coherence Tomography ◽  
Deep Learning ◽  
Optical Coherence Tomography Angiography ◽  
Diabetic Mouse ◽  
Optical Coherence

scholarly journals Foveal avascular zone segmentation in optical coherence tomography angiography images using a deep learning approach

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Reza Mirshahi ◽  
Pasha Anvari ◽  
Hamid Riazi-Esfahani ◽  
Mahsa Sardarinia ◽  
Masood Naseripour ◽  
...  
Keyword(s):  
Optical Coherence Tomography ◽  
Diabetic Retinopathy ◽  
Deep Learning ◽  
Healthy Subjects ◽  
Optical Coherence Tomography Angiography ◽  
Validation Dataset ◽  
Diabetic Patients ◽  
Dice Similarity Coefficient ◽  
Optical Coherence ◽  
Avascular Zone

AbstractThe purpose of this study was to introduce a new deep learning (DL) model for segmentation of the fovea avascular zone (FAZ) in en face optical coherence tomography angiography (OCTA) and compare the results with those of the device’s built-in software and manual measurements in healthy subjects and diabetic patients. In this retrospective study, FAZ borders were delineated in the inner retinal slab of 3 × 3 enface OCTA images of 131 eyes of 88 diabetic patients and 32 eyes of 18 healthy subjects. To train a deep convolutional neural network (CNN) model, 126 enface OCTA images (104 eyes with diabetic retinopathy and 22 normal eyes) were used as training/validation dataset. Then, the accuracy of the model was evaluated using a dataset consisting of OCTA images of 10 normal eyes and 27 eyes with diabetic retinopathy. The CNN model was based on Detectron2, an open-source modular object detection library. In addition, automated FAZ measurements were conducted using the device’s built-in commercial software, and manual FAZ delineation was performed using ImageJ software. Bland–Altman analysis was used to show 95% limit of agreement (95% LoA) between different methods. The mean dice similarity coefficient of the DL model was 0.94 ± 0.04 in the testing dataset. There was excellent agreement between automated, DL model and manual measurements of FAZ in healthy subjects (95% LoA of − 0.005 to 0.026 mm2 between automated and manual measurement and 0.000 to 0.009 mm2 between DL and manual FAZ area). In diabetic eyes, the agreement between DL and manual measurements was excellent (95% LoA of − 0.063 to 0.095), however, there was a poor agreement between the automated and manual method (95% LoA of − 0.186 to 0.331). The presence of diabetic macular edema and intraretinal cysts at the fovea were associated with erroneous FAZ measurements by the device’s built-in software. In conclusion, the DL model showed an excellent accuracy in detection of FAZ border in enfaces OCTA images of both diabetic patients and healthy subjects. The DL and manual measurements outperformed the automated measurements of the built-in software.

scholarly journals Automatic quantification of superficial foveal avascular zone in optical coherence tomography angiography implemented with deep learning

2019 ◽  
Vol 2 (1) ◽  
Author(s):  
Menglin Guo ◽  
Mei Zhao ◽  
Allen M. Y. Cheong ◽  
Houjiao Dai ◽  
Andrew K. C. Lam ◽  
...  
Keyword(s):  
Optical Coherence Tomography ◽  
Deep Learning ◽  
Optical Coherence Tomography Angiography ◽  
Automatic Segmentation ◽  
Clinical Analysis ◽  
Foveal Avascular Zone ◽  
Dice Similarity Coefficient ◽  
Optical Coherence ◽  
Hole Filling ◽  
Avascular Zone

AbstractAn accurate segmentation and quantification of the superficial foveal avascular zone (sFAZ) is important to facilitate the diagnosis and treatment of many retinal diseases, such as diabetic retinopathy and retinal vein occlusion. We proposed a method based on deep learning for the automatic segmentation and quantification of the sFAZ in optical coherence tomography angiography (OCTA) images with robustness to brightness and contrast (B/C) variations. A dataset of 405 OCTA images from 45 participants was acquired with Zeiss Cirrus HD-OCT 5000 and the ground truth (GT) was manually segmented subsequently. A deep learning network with an encoder–decoder architecture was created to classify each pixel into an sFAZ or non-sFAZ class. Subsequently, we applied largest-connected-region extraction and hole-filling to fine-tune the automatic segmentation results. A maximum mean dice similarity coefficient (DSC) of 0.976 ± 0.011 was obtained when the automatic segmentation results were compared against the GT. The correlation coefficient between the area calculated from the automatic segmentation results and that calculated from the GT was 0.997. In all nine parameter groups with various brightness/contrast, all the DSCs of the proposed method were higher than 0.96. The proposed method achieved better performance in the sFAZ segmentation and quantification compared to two previously reported methods. In conclusion, we proposed and successfully verified an automatic sFAZ segmentation and quantification method based on deep learning with robustness to B/C variations. For clinical applications, this is an important progress in creating an automated segmentation and quantification applicable to clinical analysis.

scholarly journals Enhanced Visualization of Retinal Microvasculature in Optical Coherence Tomography Angiography Imaging via Deep Learning

2020 ◽  
Vol 9 (5) ◽  
pp. 1322 ◽  
Author(s):  
Shin Kadomoto ◽  
Akihito Uji ◽  
Yuki Muraoka ◽  
Tadamichi Akagi ◽  
Akitaka Tsujikawa
Keyword(s):  
Optical Coherence Tomography ◽  
Deep Learning ◽  
Optical Coherence Tomography Angiography ◽  
Image Acquisition ◽  
Acquisition Time ◽  
Single Shot ◽  
Optical Coherence ◽  
Original Image ◽  
Noise Ratio ◽  
Denoised Image

Background: To investigate the effects of deep learning denoising on quantitative vascular measurements and the quality of optical coherence tomography angiography (OCTA) images. Methods: U-Net-based deep learning denoising with an averaged OCTA data set as teacher data was used in this study. One hundred and thirteen patients with various retinal diseases were examined. An OCT HS-100 (Canon inc., Tokyo, Japan) performed a 3 × 3 mm2 superficial capillary plexus layer slab scan centered on the fovea 10 times. A single-shot image was defined as the original image and the 10-frame averaged image and denoised image generated from the original image using deep learning denoising for the analyses were obtained. The main parameters measured were the OCTA image acquisition time, contrast-to-noise ratio (CNR), peak signal-to-noise ratio (PSNR), vessel density (VD), vessel length density (VLD), vessel diameter index (VDI), and fractal dimension (FD) of the original, averaged, and denoised images. Results: One hundred and twelve eyes of 108 patients were studied. Deep learning denoising removed the background noise and smoothed the rough vessel surface. The image acquisition times for the original, averaged, and denoised images were 16.6 ± 2.4, 285 ± 38, and 22.1 ± 2.4 s, respectively (P < 0.0001). The CNR and PSNR of the denoised image were significantly higher than those of the original image (P < 0.0001). There were significant differences in the VLD, VDI, and FD (P < 0.0001) after deep learning denoising. Conclusions: The deep learning denoising method achieved high speed and high quality OCTA imaging. This method may be a viable alternative to the multiple image averaging technique.

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