Initial steps on mapping differentially expressed proteins in bovine preantral follicles and ovarian tissue: an approach using single‐follicle MALDI‐MS and Mass Spectrometry Imaging (MSI) analysis

Author(s):  
Fernanda Paulini ◽  
Michelle Silva Araujo ◽  
Luciano Paulino Silva ◽  
Carolina Madeira Lucci
2017 ◽  
Vol 159 ◽  
pp. 77-91 ◽  
Author(s):  
Jasmine Naru ◽  
Ritu Aggarwal ◽  
Ashok Kumar Mohanty ◽  
Usha Singh ◽  
Deepak Bansal ◽  
...  

Author(s):  
Howsun Jow ◽  
Richard J. Boys ◽  
Darren J. Wilkinson

AbstractIn this paper we develop a Bayesian statistical inference approach to the unified analysis of isobaric labelled MS/MS proteomic data across multiple experiments. An explicit probabilistic model of the log-intensity of the isobaric labels’ reporter ions across multiple pre-defined groups and experiments is developed. This is then used to develop a full Bayesian statistical methodology for the identification of differentially expressed proteins, with respect to a control group, across multiple groups and experiments. This methodology is implemented and then evaluated on simulated data and on two model experimental datasets (for which the differentially expressed proteins are known) that use a TMT labelling protocol.


2009 ◽  
Vol 8 (7) ◽  
pp. 3430-3438 ◽  
Author(s):  
Daniela M. Schulz ◽  
Claudia Böllner ◽  
Gerry Thomas ◽  
Mike Atkinson ◽  
Irene Esposito ◽  
...  

Foods ◽  
2020 ◽  
Vol 9 (4) ◽  
pp. 408 ◽  
Author(s):  
Hirofumi Enomoto ◽  
Masahiro Kotani ◽  
Takayuki Ohmura

Mass spectrometry imaging (MSI) using matrix-assisted laser desorption/ionization (MALDI) is a powerful technique for visualizing metabolites in the strawberry fruit. During sample preparation for MALDI-MSI, sectioning of the samples is usually required. In general, MALDI-MSI analysis of strawberry fruits that are larger than a single glass slide is difficult because thin sections cannot be prepared. In this study, we attempted to visualize metabolites in large strawberry fruits by MSI, employing a blotting method that uses desorption ionization using a through-hole alumina membrane (DIUTHAME) chip. Large strawberry fruits were cut and a DIUTHAME chip was set on the cross-section to blot the metabolites. After drying the DIUTHAME chip, the metabolites were measured in positive and negative ion modes using a commercial MALDI-type mass spectrometer. Several peaks were detected in both the ion modes. Various metabolites related to food quality, such as sugars, organic acids, and anthocyanins, were detected and successfully visualized by blotting on a DIUTHAME chip in MSI. These results suggest that blotting using a DIUTHAME chip in MSI is useful for visualizing the metabolites present in the strawberry fruit.


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