Structural and functional analysis of tomato β-galactosidase 4: insight into the substrate specificity of the fruit softening-related enzyme

2016 ◽  
Vol 86 (4) ◽  
pp. 300-307 ◽  
Author(s):  
Masahiro Eda ◽  
Takashi Matsumoto ◽  
Megumi Ishimaru ◽  
Toshiji Tada
PLoS ONE ◽  
2012 ◽  
Vol 7 (9) ◽  
pp. e42198 ◽  
Author(s):  
Won Yong Jung ◽  
Seul Gi Kwon ◽  
Minky Son ◽  
Eun Seok Cho ◽  
Yuno Lee ◽  
...  

2007 ◽  
Vol 14 (11) ◽  
pp. 1108-1109 ◽  
Author(s):  
Shyamasri Biswas ◽  
Mohammad M Mohammad ◽  
Dimki R Patel ◽  
Liviu Movileanu ◽  
Bert van den Berg

2016 ◽  
Vol 113 (9) ◽  
pp. 2526-2531 ◽  
Author(s):  
Sibongile Mafu ◽  
Meirong Jia ◽  
Jiachen Zi ◽  
Dana Morrone ◽  
Yisheng Wu ◽  
...  

The substrate specificity of enzymes from natural products’ metabolism is a topic of considerable interest, with potential biotechnological use implicit in the discovery of promiscuous enzymes. However, such studies are often limited by the availability of substrates and authentic standards for identification of the resulting products. Here, a modular metabolic engineering system is used in a combinatorial biosynthetic approach toward alleviating this restriction. In particular, for studies of the multiply reactive cytochrome P450, ent-kaurene oxidase (KO), which is involved in production of the diterpenoid plant hormone gibberellin. Many, but not all, plants make a variety of related diterpenes, whose structural similarity to ent-kaurene makes them potential substrates for KO. Use of combinatorial biosynthesis enabled analysis of more than 20 such potential substrates, as well as structural characterization of 12 resulting unknown products, providing some insight into the underlying structure–function relationships. These results highlight the utility of this approach for investigating the substrate specificity of enzymes from complex natural products’ biosynthesis.


2018 ◽  
Vol 27 (6) ◽  
pp. 1055-1066 ◽  
Author(s):  
Katie G Owings ◽  
Joshua B Lowry ◽  
Yiling Bi ◽  
Matthew Might ◽  
Clement Y Chow

Biochemistry ◽  
2005 ◽  
Vol 44 (8) ◽  
pp. 2949-2962 ◽  
Author(s):  
Sijiu Liu ◽  
Zhibing Lu ◽  
Yin Han ◽  
Eugene Melamud ◽  
Debra Dunaway-Mariano ◽  
...  

2011 ◽  
Vol 2 (10) ◽  
pp. 827-836 ◽  
Author(s):  
Limei Ren ◽  
Xiaohong Qin ◽  
Xiaofang Cao ◽  
Lele Wang ◽  
Fang Bai ◽  
...  

2010 ◽  
Vol 432 (2) ◽  
pp. 387-398 ◽  
Author(s):  
Shin-ya Morita ◽  
Atsuko Takeuchi ◽  
Shuji Kitagawa

The enzyme catalysing the conversion of PE (phosphatidylethanolamine) into PC (phosphatidylcholine), PEMT (PE N-methyltransferase), exists as two isoforms, PEMT-L (longer isoform of PEMT) and PEMT-S (shorter isoform of PEMT). In the present study, to compare the functions of the two isoforms of PEMT, we established HEK (human embryonic kidney)-293 cell lines stably expressing PEMT-L and PEMT-S. Both PEMT-L and PEMT-S were localized in the ER (endoplasmic reticulum). PEMT-L, but not PEMT-S, was N-glycosylated with high-mannose oligosaccharides. The enzymatic activity of PEMT-S was much higher than that of PEMT-L. By using novel enzymatic assays for measuring PC and PE, we showed that PEMT-L and PEMT-S expression remarkably increased the cellular PC content, whereas the PE content was decreased by PEMT-S expression, but was hardly affected by PEMT-L expression. The cellular content of phosphatidylserine was also reduced by the expression of PEMT-L or PEMT-S. MS analyses demonstrated that the expression of PEMT-S led to more increases in the molecular species of PC and PC-O (ether-linked PC) with longer polyunsaturated chains than that of PEMT-L, whereas the PC-O species with shorter chains were increased more by PEMT-L expression than by PEMT-S expression, suggesting a difference in the substrate specificity of PEMT-L and PEMT-S. On the other hand, various PE and PE-O species were decreased by PEMT-S expression. In addition, PEMT-L and PEMT-S expression promoted the proliferation of HEK-293 cells. Based upon these findings, we propose a model in which the enzymatic activity and substrate specificity are regulated by the glycosylated N-terminal region of PEMT-L localized in the ER lumen.


2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Lorena Ilcu ◽  
Wolf Röther ◽  
Jakob Birke ◽  
Anton Brausemann ◽  
Oliver Einsle ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document