scholarly journals Comparison of Approaches to Testing Equality of Expectations Among Samples from Poisson and Negative Binomial Distribution

2018 ◽  
Vol 66 (4) ◽  
pp. 1025-1034
Author(s):  
Martin Tejkal ◽  
Zuzana Hübnerová
Keyword(s):  
Maximum Likelihood ◽  
Sample Size ◽  
Negative Binomial Distribution ◽  
Binomial Distribution ◽  
Linear Models ◽  
Negative Binomial ◽  
Test Statistics ◽  
Power Functions ◽  
Generalised Linear Models ◽  
The Relationship

The paper deals with testing of the hypothesis of equality of expectations among p samples from Poisson or negative binomial distribution. a comparison of two main approaches is carried out. The first approach is based on transforming the samples from either Poisson or negative binomial distribution in order to achieve normality or variance stability, and then testing the hypothesis of equality of expectations via the F‑test. In the second approach, test statistics coming from the theory of maximum likelihood appearing in generalised linear models framework, specially designed for testing the hypothesis among samples from the respective distributions (Poisson or negative binomial), are used. The comparison is done graphically, by plotting the simulated power functions of the test of the hypothesis of equality of expectations, when first or second approach was used. Additionally, the relationship between the power functions obtained via the respective approaches and sample sizes is studied by evaluating the respective power functions as functions of a sample size numerically.

scholarly journals Generalized linear models with random effects for the description of data with excess zeros

2011 ◽  
Vol 54 (6) ◽  
pp. 661-675
Author(s):  
N. Mielenz ◽  
K. Thamm ◽  
M. Bulang ◽  
J. Spilke
Keyword(s):  
Random Effects ◽  
Negative Binomial Distribution ◽  
Binomial Distribution ◽  
Linear Models ◽  
Negative Binomial ◽  
Detailed Comparison ◽  
Response Scale ◽  
Explanatory Variables ◽  
Excess Zeros ◽  
Explanatory Factors

Abstract. In this paper count data with excess zeros and repeated observations per subject are evaluated. If the number of values observed for the zero event in the trial substantially exceeds the expected number (derived from the Poisson or from the negative binomial distribution), then there is an excess of zeros. Hurdle and zero-inflated models with random effects are available in order to evaluate this type of data. In this paper both model approaches are presented and are used for the evaluation of the number of visits to the feeder per cow per hour. Finally, for the analysis of the target trait a hurdle model with random effects based on a negative binomial distribution was used. This analysis was derived from a detailed comparison of models and was needed because of a simpler computer implementation. For improved interpretation of the results, the levels of the explanatory factors (for example, the classes of lactation) were not averaged in the link scale, but rather in the response scale. The deciding explanatory variables for the pattern of visiting activities in the 24-hour cycle are the milking and cleaning times at hours 4, 7, 12 and 20. The highly significant differences in the visiting frequencies of cows of the first lactation and those of higher lactations were explained by competition for access to the feeder and thus to the feed.

scholarly journals Sampling Hazelnuts for Aflatoxin: Effect of Sample Size and Accept/Reject Limit on Reducing the Risk of Misclassifying Lots

2007 ◽  
Vol 90 (4) ◽  
pp. 1028-1035 ◽  
Author(s):  
Guner Ozay ◽  
Ferda Seyhan ◽  
Aysun Yilmaz ◽  
Thomas B Whitaker ◽  
Andrew B Slate ◽  
...  
Keyword(s):  
Sample Size ◽  
Negative Binomial Distribution ◽  
Binomial Distribution ◽  
Negative Binomial ◽  
Food Additives ◽  
Sampling Plan ◽  
Test Results ◽  
Sampling Plans ◽  
Wide Range ◽  
Sample Test

Abstract About 100 countries have established regulatory limits for aflatoxin in food and feeds. Because these limits vary widely among regulating countries, the Codex Committee on Food Additives and Contaminants began work in 2004 to harmonize aflatoxin limits and sampling plans for aflatoxin in almonds, pistachios, hazelnuts, and Brazil nuts. Studies were developed to measure the uncertainty and distribution among replicated sample aflatoxin test results taken from aflatoxin-contaminated treenut lots. The uncertainty and distribution information is used to develop a model that can evaluate the performance (risk of misclassifying lots) of aflatoxin sampling plan designs for treenuts. Once the performance of aflatoxin sampling plans can be predicted, they can be designed to reduce the risks of misclassifying lots traded in either the domestic or export markets. A method was developed to evaluate the performance of sampling plans designed to detect aflatoxin in hazelnuts lots. Twenty hazelnut lots with varying levels of contamination were sampled according to an experimental protocol where 16 test samples were taken from each lot. The observed aflatoxin distribution among the 16 aflatoxin sample test results was compared to lognormal, compound gamma, and negative binomial distributions. The negative binomial distribution was selected to model aflatoxin distribution among sample test results because it gave acceptable fits to observed distributions among sample test results taken from a wide range of lot concentrations. Using the negative binomial distribution, computer models were developed to calculate operating characteristic curves for specific aflatoxin sampling plan designs. The effect of sample size and accept/reject limits on the chances of rejecting good lots (sellers' risk) and accepting bad lots (buyers' risk) was demonstrated for various sampling plan designs.

The relationship between IgA activity against 4th-stage larvae and density-dependent effects on the number of 4th-stage larvae ofTeladorsagia circumcinctain naturally infected sheep

Parasitology ◽  
2004 ◽  
Vol 129 (3) ◽  
pp. 363-369 ◽  
Author(s):  
M. J. STEAR ◽  
K. BAIRDEN ◽  
G. T. INNOCENT ◽  
S. MITCHELL ◽  
S. STRAIN ◽  
...  
Keyword(s):  
Negative Binomial Distribution ◽  
Binomial Distribution ◽  
Negative Binomial ◽  
Infection Intensity ◽  
Intensity Of Infection ◽  
Mean Intensity ◽  
Teladorsagia Circumcincta ◽  
The Mean ◽  
Low Levels ◽  
The Relationship

The number ofTeladorsagia circumcincta4th-stage larvae in naturally infected lambs from a single farm varied among lambs and among different years. Within each year the distribution of 4th-stage larvae among lambs was similar to that expected from a negative binomial distribution. The ratio of 4th-stage larvae to adultT. circumcinctawas low in two years with a low mean intensity of infection but high in two years with a higher mean intensity of infection. The negative binomial distribution is defined by the mean and byk, a parameter that measures dispersion;kwas low when mean infection intensity was low but higher when mean infection intensity was high. Askis an inverse index of overdispersion this indicated that the distribution of 4th-stage larvae was more overdispersed at low levels of infection. In a combined analysis, the number of adultT. circumcinctaand the plasma IgA activity against 4th-stage larvae were both associated with increased numbers of 4th-stage larvae. There was a statistical interaction between the number of adults and IgA activity that moderated their combined effect.

scholarly journals A Bivariate Model based on Compound Negative Binomial Distribution

2018 ◽  
Vol 41 (1) ◽  
pp. 87-108 ◽  
Author(s):  
Maha Ahmad Omair ◽  
Fatimah E AlMuhayfith ◽  
Abdulhamid A Alzaid
Keyword(s):  
Maximum Likelihood ◽  
Method Of Moments ◽  
Negative Binomial Distribution ◽  
Binomial Distribution ◽  
Traffic Accidents ◽  
Negative Binomial ◽  
Conditional Distributions ◽  
Bivariate Model ◽  
Distributional Properties ◽  
Parameter Estimators

A new bivariate model is introduced by compounding negative binomial and geometric distributions. Distributional properties, including joint, marginal and conditional distributions are discussed. Expressions for the product moments, covariance and correlation coefficient are obtained. Some properties such as ordering, unimodality, monotonicity and self-decomposability are studied. Parameter estimators using the method of moments and maximum likelihood are derived. Applications to traffic accidents data are illustrated.

scholarly journals Spatial Pattern of Strawberry Powdery Mildew (Podosphaera aphanis) and Airborne Inoculum

Plant Disease ◽  
2014 ◽  
Vol 98 (1) ◽  
pp. 43-54 ◽  
Author(s):  
H. Van der Heyden ◽  
M. Lefebvre ◽  
L. Roberge ◽  
L. Brodeur ◽  
O. Carisse
Keyword(s):  
Powdery Mildew ◽  
Power Law ◽  
Negative Binomial Distribution ◽  
Binomial Distribution ◽  
Negative Binomial ◽  
Disease Incidence ◽  
Data Sets ◽  
Incidence Data ◽  
Airborne Inoculum ◽  
The Relationship

The relationship between strawberry powdery mildew and airborne conidium concentration (ACC) of Podosphaera aphanis was studied using data collected from 2006 to 2009 in 15 fields, and spatial pattern was described using 2 years of airborne inoculum and disease incidence data collected in fields planted with the June-bearing strawberry (Fragaria × ananassa) cultivar Jewel. Disease incidence, expressed as the proportion of diseased leaflets, and ACC were monitored in fields divided into 3 × 8 grids containing 24 100 m2 quadrats. Variance-to-mean ratio, index of dispersion, negative binomial distribution, Poisson distribution, and binomial and beta-binomial distributions were used to characterize the level of spatial heterogeneity. The relationship between percent leaf area diseased and daily ACC was linear, while the relationship between ACC and disease incidence followed an exponential growth curve. The V/M ratios were significantly greater than 1 for 100 and 96% of the sampling dates for ACC sampled at 0.35 m from the ground (ACC0.35m) and for ACC sampled at 1.0 m from the ground (ACC1.0m), respectively. For disease incidence, the index of dispersion D was significantly greater than 1 for 79% of the sampling dates. The negative binomial distribution fitted 86% of the data sets for both ACC1.0m and ACC0.35m. For disease incidence data, the beta-binomial distribution provided a good fit of 75% of the data sets. Taylor's power law indicated that, for ACC at both sampling heights, heterogeneity increased with increasing mean ACC, whereas the binary form of the power law suggested that heterogeneity was not dependent on the mean for disease incidence. When the spatial location of each sampling location was taken into account, Spatial Analysis by Distance Indices showed low aggregation indices for both ACCs and disease incidence, and weak association between ACC and disease incidence. Based on these analyses, it was found that the distribution of strawberry powdery mildew was weakly aggregated. Although a higher level of heterogeneity was observed for airborne inoculum, the heterogeneity was low with no distinct foci, suggesting that epidemics are induced by well-distributed inoculum. This low level of heterogeneity allows mean airborne inoculum concentration to be estimated using only one sampler per field with an overall accuracy of at least 0.841. The results obtained in this study could be used to develop a sampling scheme that will improve strawberry powdery mildew risk estimation.

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