scholarly journals Identification of Mimotope Peptides Which Bind to the Mycotoxin Deoxynivalenol-Specific Monoclonal Antibody

1999 ◽  
Vol 65 (8) ◽  
pp. 3279-3286 ◽  
Author(s):  
Qiaoping Yuan ◽  
James J. Pestka ◽  
Brandon M. Hespenheide ◽  
Leslie A. Kuhn ◽  
John E. Linz ◽  
...  
Keyword(s):  
Monoclonal Antibody ◽  
Alkaline Phosphatase ◽  
Protein Synthesis ◽  
Amino Acid ◽  
Synthetic Peptide ◽  
Amino Acid Sequences ◽  
In Vitro Translation ◽  
Enzyme Linked Immunosorbent Assay ◽  
Translation System

ABSTRACT Monoclonal antibody 6F5 (mAb 6F5), which recognizes the mycotoxin deoxynivalenol (DON) (vomitoxin), was used to select for peptides that mimic the mycotoxin by employing a library of filamentous phages that have random 7-mer peptides on their surfaces. Two phage clones selected from the random peptide phage-displayed library coded for the amino acid sequences SWGPFPF and SWGPLPF. These clones were designated DONPEP.2 and DONPEP.12, respectively. The results of a competitive enzyme-linked immunosorbent assay (ELISA) suggested that the two phage displayed peptides bound to mAb 6F5 specifically at the DON binding site. The amino acid sequence of DONPEP.2 plus a structurally flexible linker at the C terminus (SWGPFPFGGGSC) was synthesized and tested to determine its ability to bind to mAb 6F5. This synthetic peptide (designated peptide C430) and DON competed with each other for mAb 6F5 binding. When translationally fused with bacterial alkaline phosphatase, DONPEP.2 bound specifically to mAb 6F5, while the fusion protein retained alkaline phosphatase activity. The potential of using DONPEP.2 as an immunochemical reagent in a DON immunoassay was evaluated with a DON-spiked wheat extract. When peptide C430 was conjugated to bovine serum albumin, it elicited antibody specific to peptide C430 but not to DON in both mice and rabbits. In an in vitro translation system containing rabbit reticulocyte lysate, synthetic peptide C430 did not inhibit protein synthesis but did show antagonism toward DON-induced protein synthesis inhibition. These data suggest that the peptides selected in this study bind to mAb 6F5 and that peptide C430 binds to ribosomes at the same sites as DON.

scholarly journals Conjugate formation in urea: coupling of insoluble peptides to alkaline phosphatase for ELISA and in situ detection of antibody-forming cells.

1991 ◽  
Vol 39 (7) ◽  
pp. 987-992 ◽  
Author(s):  
K Gerritse ◽  
M Fasbender ◽  
W Boersma ◽  
E Claassen
Keyword(s):  
Alkaline Phosphatase ◽  
Synthetic Peptide ◽  
Enzyme Linked Immunosorbent Assay ◽  
Sufficient Degree ◽  
Antipeptide Antibody ◽  
In Situ Detection ◽  
Antibody Secreting Cells

We report here a new method to produce synthetic peptide/alkaline phosphatase (AP) conjugates in the presence of urea. The method allows the use of peptides that are not soluble to a sufficient degree in aqueous buffers. The presence of 8 M urea during the construction of the synthetic peptide/AP conjugates does not influence enzyme activity nor the affinity of the anti-peptide antibodies for the conjugated peptide. We demonstrate that these synthetic peptide/AP conjugates can be used for detection of specific antipeptide antibody-forming cells (AFC) in vivo. This method for constructing enzyme conjugates with insoluble proteins or peptides suggest not only new possibilities for detection of specific AFC in vivo but also for applications in receptor-ligand studies, ELISA (enzyme-linked immunosorbent assay), and spot ELISA for detection of antibody-secreting cells in vitro.

Nucleotide (cDNA) sequence encoding the horse gonadotrophin α-subunit

1987 ◽  
Vol 115 (2) ◽  
pp. 341-346 ◽  
Author(s):  
F. Stewart ◽  
J. A. Thomson ◽  
S. E. A. Leigh ◽  
J. M. Warwick
Keyword(s):  
Amino Acid ◽  
Peptide Sequencing ◽  
Amino Acid Sequences ◽  
In Vitro Translation ◽  
Northern Hybridization ◽  
Cdna Clones ◽  
Subunit Gene ◽  
Α Subunit ◽  
Pituitary Glands

ABSTRACT Several cDNA clones corresponding to mRNA for the α-subunit of the horse (Equus caballus) pituitary and placental (chorionic) gonadotrophic hormones have been isolated and sequenced. Polyadenylated mRNA was purified from horse pituitary glands (the source of FSH and LH) and horse placental tissues (the source of chorionic gonadotrophin; CG). The mRNA preparations were characterized by in-vitro translation and Northern hybridization techniques using human and ovine gonadotrophin cDNA clones as probes. Complementary DNA libraries were created from the pituitary and placental mRNAs and a human CG α-subunit probe was used to isolate several horse α-subunit cDNA clones. The α-subunit nucleotide sequence from both sources of tissue was identical, thereby indicating that in the horse (as in man) the same gonadotrophin α-subunit gene is expressed in the pituitary and placenta. Our results are consistent with transcription of a single α-subunit gene for all the glycoprotein hormones in the horse, and we suggest that the reported differences between the horse CG and FSH α-subunit amino acid sequences determined by conventional peptide sequencing methods arose due to errors in the FSH α-subunit sequence. Comparison of the deduced amino acid sequence of the horse α-subunit with that of other α-subunit sequences indicated a number of significant differences which may be related to the unusual receptor-binding properties of the equine gonadotrophins. J. Endocr. (1987) 115, 341–346

Incorporation of glycosylated amino acid into protein by an in vitro translation system

2013 ◽  
Vol 23 (20) ◽  
pp. 5634-5636 ◽  
Author(s):  
Teruhiko Matsubara ◽  
Kazutoshi Iijima ◽  
Takayoshi Watanabe ◽  
Takahiro Hohsaka ◽  
Toshinori Sato
Keyword(s):  
Amino Acid ◽  
In Vitro Translation ◽  
Translation System

Changes in Ribosome Organization and Messenger RNA Abundance in Ripening Tomato Fruits

1984 ◽  
Vol 11 (3) ◽  
pp. 225 ◽  
Author(s):  
J Spiers ◽  
CJ Brady ◽  
D Grierson ◽  
E Lee
Keyword(s):  
Protein Synthesis ◽  
Ribosomal Rna ◽  
Messenger Rna ◽  
In Vitro Translation ◽  
Translation System ◽  
Active Protein ◽  
Tomato Fruits ◽  
Rna And Protein Synthesis ◽  
Early Ripening

The involvement of RNA and protein synthesis in fruit ripening was investigated. Mature-green tomato fruits were found to contain about 30% of their ribosomal RNA in polyribosomes. At the 'breaker' or early ripening stage, about 50% of rRNA was in polyribosomes and this distribution of rRNA was maintained until fruits were fully ripe. The continued presence of polyribosomes is consistent with active protein synthesis persisting through and beyond the climacteric period when the wall-hydrolysing enzyme polygalacturonase accumulates and fruits soften, synthesize lycopene and undergo other ripening related changes. Poly(A)-containing RNA purified from polyribosomes extracted from individual fruits was used to prime the synthesis of [35S]methionine-labelled polypeptides by a wheat germ in vitro translation system. The pattern of polypeptides synthesized in response to RNA from mature-green fruits differed from that given by RNA from ripening fruits. The majority of changes were found to occur within approximately 48 h of the increase of ethylene synthesis and were apparent in all fruits with any pink or red colour. Similar results were obtained by translating total cellular RNA and total polyribosomal RNA indicating that the major RNA species shown in this study to change in abundance during ripening are polyadenylated, and hence most probably cytoplasmic, and do not accumulate as 'stored messages' outside of the polyribosomes. The differences between green and ripening fruits in polyribosome profiles were demonstrated in two cultivars of tomato. Differences in mRNA populations between green and ripe fruits were found in three cultivars.

Structural and functional similarities between the central eukaryotic initiation factor (eIF)4A-binding domain of mammalian eIF4G and the eIF4A-binding domain of yeast eIF4G

2001 ◽  
Vol 355 (1) ◽  
pp. 223-230 ◽  
Author(s):  
Diana DOMINGUEZ ◽  
Elisabeth KISLIG ◽  
Michael ALTMANN ◽  
Hans TRACHSEL
Keyword(s):  
Amino Acid ◽  
Binding Site ◽  
Mammalian Cells ◽  
Amino Acid Level ◽  
Binding Domain ◽  
In Vitro Translation ◽  
Initiation Factor ◽  
Translation System ◽  
Eukaryotic Initiation Factor

The translation eukaryotic initiation factor (eIF)4G of the yeast Saccharomyces cerevisiae interacts with the RNA helicase eIF4A (a member of the DEAD-box protein family; where DEAD corresponds to Asp-Glu-Ala-Asp) through a C-terminal domain in eIF4G (amino acids 542–883). Mammalian eIF4G has two interaction domains for eIF4A, a central domain and a domain close to the C-terminus. This raises the question of whether eIF4A binding to eIF4G is conserved between yeast and mammalian cells or whether it is different. We isolated eIF4G1 mutants defective in eIF4A binding and showed that these mutants are strongly impaired in translation and growth. Extracts from mutants displaying a temperature-sensitive phenotype for growth have low in vitro translation activity, which can be restored by addition of the purified eIF4G1–eIF4E complex, but not by eIF4E alone. Analysis of mutant eIF4G542–883 proteins defective in eIF4A binding shows that the interaction of yeast eIF4A with eIF4G1 depends on amino acid motifs that are conserved between the yeast eIF4A-binding site and the central eIF4A-binding domain of mammalian eIF4G. We show that mammalian eIF4A binds tightly to yeast eIF4G1 and, furthermore, that mutant yeast eIF4G542–883 proteins, which do not bind yeast eIF4A, do not interact with mammalian eIF4A. Despite the conservation of the eIF4A-binding site in eIF4G and the strong sequence conservation between yeast and mammalian eIF4A (66% identity; 82% similarity at the amino acid level) mammalian eIF4A does not substitute for the yeast factor in vivo and is not functional in a yeast in vitro translation system.

Placental Alkaline Phosphatase: A Model for Studying COOH-Terminal Processing of Phosphatidylinositol-Glycan-Anchored Membrane Proteins

1992 ◽  
Vol 38 (12) ◽  
pp. 2510-2516 ◽  
Author(s):  
R Amthauer ◽  
K Kodukula ◽  
S Udenfriend
Keyword(s):  
T Cells ◽  
Alkaline Phosphatase ◽  
Amino Acid ◽  
In Vitro Translation ◽  
Placental Alkaline Phosphatase ◽  
Intact Cells ◽  
Mutant Proteins ◽  
Glycosylation Sites ◽  
Microsomal Membranes

Abstract Placental alkaline phosphatase (PLAP) has been used as a model for studying the biosynthesis of the phosphatidylinositol-glycan (PI-G)-protein linkage in intact cells and in cell-free systems. However, for the study of processing in cell-free systems, a small protein devoid of glycosylation sites is preferable. A PLAP-derived cDNA was engineered that codes for a nascent protein (mini-PLAP) of 28 kDa in which the NH2- and COOH-termini are retained but most of the interior of PLAP is deleted. In vitro translation of mini-PLAP mRNA in the presence of rough microsomal membranes yields mature PI-G-tailed mini-PLAP. Processing of nascent mutant proteins occurs only when a small amino acid is located at the site of cleavage and PI-G attachment (omega site). Mutations adjacent and COOH-terminal to the omega site have revealed that the omega + 1 site is promiscuous in its requirements but that only glycine and alanine are effective at the omega + 2 site. Rough microsomal membranes from T cells deficient in PI-G biosynthesis do not support processing of mini-PLAP; addition of exogenous PI-G restores activity. Translocation of the proprotein, most likely requiring ATP and GTP, precedes COOH-terminal processing.

In vitro translation in a hybrid cell free lysate with exogenous cellular ribosomes

2015 ◽  
Vol 467 (3) ◽  
pp. 387-398 ◽  
Author(s):  
Baptiste Panthu ◽  
Didier Décimo ◽  
Laurent Balvay ◽  
Théophile Ohlmann
Keyword(s):  
Gene Expression ◽  
Protein Synthesis ◽  
Hybrid System ◽  
Hybrid Cell ◽  
Cell Types ◽  
In Vitro Translation ◽  
Translation System ◽  
Different Origins ◽  
Cell Free Protein Synthesis

Cell free protein synthesis systems (CFPS) have been widely used to express proteins and to explore the pathways of gene expression. In the present manuscript, we describe the design of a novel adaptable hybrid in vitro translation system which is assembled with ribosomes isolated from many different origins. We first show that this hybrid system exhibits all important features such as efficiency, sensitivity, reproducibility and the ability to translate specialized mRNAs in less than 1 h. In addition, the unique design of this cell free assay makes it highly adaptable to utilize ribosomes isolated from many different organs, tissues or cell types.

scholarly journals Specific inhibition of procollagen C-endopeptidase activity by synthetic peptide with conservative sequence found in chordin.

2008 ◽  
Vol 55 (2) ◽  
pp. 297-305 ◽  
Author(s):  
Marta Lesiak ◽  
Aleksandra Augusciak-Duma ◽  
Anna Szydlo ◽  
Ksymena Pruszczynska ◽  
Aleksander L Sieron
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Synthetic Peptide ◽  
Amino Acid Sequences ◽  
Type I ◽  
Regulatory Domains ◽  
Amino Acid Peptide ◽  
Procollagen Type ◽  
Procollagen Type I

Procollagen C-endopeptidase (BMP-1) and N-endopeptidase (ADAMTS-2) are key enzymes for correct and efficient conversion of fibrillar procollagens to their self assembling monomers. Thus, they have an essential role in building and controlling the quality of extracellular matrices (ECMs). Here, we tested inhibition of activity of the largest variant of BMP-1, a recombinant mammalian tolloid (mTld), in vitro by three synthetic peptides with conservative amino-acid sequences found in chordin using procollagen type I as a substrate. We also verified the specific action of best inhibitory 16 amino-acid peptide in the procollagen type I cleavage assay with the use of ADAMTS-2 (procollagen N-endopeptidase). Subsequently, we determined the critical residues and minimal sequence of six amino acids in the original 16 amino-acid peptide required to maintain the inhibitory potential. Studies on the interactions of 6 and 16 amino acid long peptides with the enzyme revealed their binding to non-catalytic, regulatory domains of mTld; the inhibitory activity was not due to the competition of peptides with the substrate for the enzyme active center, because mTld did not cleave the peptides. However, in the presence of mTld both peptides underwent cyclization by disulfide bond formation. Concluding, we have shown that procollagen C-endopeptidase may be specifically blocked via its non-catalytic domains by synthetic peptide consisting of 6 amino acids in the sequence found in highly conservative region of chordin. Thus, we hypothesize that the 6 amino-acid peptide could be a good candidate for anti-fibrotic drug development.

scholarly journals Mapping of a Protective Epitope of the CopB Outer Membrane Protein of Moraxella catarrhalis

1998 ◽  
Vol 66 (2) ◽  
pp. 540-548 ◽  
Author(s):  
Christoph Aebi ◽  
Leslie D. Cope ◽  
Jo L. Latimer ◽  
Sharon E. Thomas ◽  
Clive A. Slaughter ◽  
...  
Keyword(s):  
Amino Acid ◽  
Membrane Protein ◽  
Outer Membrane ◽  
Outer Membrane Protein ◽  
Moraxella Catarrhalis ◽  
Amino Acid Sequences ◽  
Nucleotide Sequence Analysis ◽  
Enzyme Linked Immunosorbent Assay ◽  
Protective Epitope

ABSTRACT A monoclonal antibody (MAb) (MAb 10F3) directed against the CopB outer membrane protein of Moraxella catarrhalis previously was found to enhance pulmonary clearance of M. catarrhalisin an animal model (M. Helminen, I. Maciver, J. L. Latimer, L. D. Cope, G. H. McCracken, Jr., and E. J. Hansen, Infect. Immun. 61:2003–2010, 1993). In the present study, this same MAb was shown to exert complement-dependent bactericidal activity against this pathogen in vitro. Nucleotide sequence analysis of thecopB gene from two MAb 10F3-reactive and two MAb 10F3-unreactive strains of M. catarrhalis revealed that the deduced amino acid sequences of these four CopB proteins were at least 90% identical. Comparison of the amino acid sequences of these proteins allowed localization of possible MAb 10F3 binding sites to five relatively small regions of the CopB protein from M. catarrhalis O35E. When five synthetic peptides representing these regions were tested for their ability to bind MAb 10F3 in a direct enzyme-linked immunosorbent assay system, an oligopeptide containing 26 amino acids was shown to bind this MAb. The actual binding region for MAb 10F3 was localized further through the use of overlapping decapeptides that spanned this 26-mer. A fusion protein containing the same 26-mer readily bound MAb 10F3 and was used to immunize mice. The resultant antiserum contained antibodies that reacted with the CopB protein of the homologous M. catarrhalis strain in Western blot analysis and bound to the surface of both homologous and heterologous strains of M. catarrhalis.

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