scholarly journals Within- and between-Lake Variability in the Composition of Bacterioplankton Communities: Investigations Using Multiple Spatial Scales

2004 ◽  
Vol 70 (1) ◽  
pp. 214-223 ◽  
Author(s):  
Anthony C. Yannarell ◽  
Eric W. Triplett
Keyword(s):  
Organic Carbon ◽  
Dissolved Organic Carbon ◽  
Bacterial Communities ◽  
Spatial Scales ◽  
Bacterial Community Composition ◽  
Intergenic Spacer ◽  
Molecular Fingerprinting ◽  
Concentration Gradients ◽  
Lake Productivity ◽  
Organic Carbon Concentration

ABSTRACT This study examined the similarity of epilimnetic bacterial community composition (BCC) across several within- and among-lake spatial scales, and the environmental factors giving rise to similar bacterial communities in different lakes were also explored. Samples were collected from 13 northern and southern Wisconsin lakes representing gradients in lake size, productivity, dissolved organic carbon and humic acid contents, and pH. Hypotheses regarding patchy distribution of bacterial communities in lakes were tested by comparing samples collected from nearby (tens of meters) and distant (hundreds of meters) sampling sites in the same lake. BCC was characterized by using a molecular fingerprinting technique, automated ribosomal intergenic spacer analysis (ARISA). Overall, samples collected at the 10-m, 100-m, and between-lake scales differed by 13, 17, and 75%, respectively. Variation at these last two scales was significant. The development of within-lake variation in BCC appeared to depend on the isolation of water by lake shoreline features such as bays or narrow constrictions. ARISA profiles from northern lakes had fewer peaks and were less similar to each other than were those of the southern lakes, suggesting that regional features do not necessarily lead to the development of similar bacterial communities. Lakes at similar positions on productivity and dissolved organic carbon concentration gradients had similar bacterial communities, and bacterial diversity was positively correlated with lake productivity and water temperature. Factorial studies taking into account these gradients, as well as regional spatial scales, should provide much insight into the nature of aquatic bacterial biogeography.

scholarly journals Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

2009 ◽  
Vol 75 (15) ◽  
pp. 5111-5120 ◽  
Author(s):  
Christian L. Lauber ◽  
Micah Hamady ◽  
Rob Knight ◽  
Noah Fierer
Keyword(s):  
Bacterial Community ◽  
Soil Ph ◽  
Bacterial Communities ◽  
Bacterial Community Structure ◽  
Spatial Scales ◽  
Bacterial Community Composition ◽  
Phylogenetic Structure ◽  
Soil Bacterial Communities ◽  
Soil Bacterial Community Structure ◽  
Soil Bacterial

ABSTRACT Soils harbor enormously diverse bacterial populations, and soil bacterial communities can vary greatly in composition across space. However, our understanding of the specific changes in soil bacterial community structure that occur across larger spatial scales is limited because most previous work has focused on either surveying a relatively small number of soils in detail or analyzing a larger number of soils with techniques that provide little detail about the phylogenetic structure of the bacterial communities. Here we used a bar-coded pyrosequencing technique to characterize bacterial communities in 88 soils from across North and South America, obtaining an average of 1,501 sequences per soil. We found that overall bacterial community composition, as measured by pairwise UniFrac distances, was significantly correlated with differences in soil pH (r = 0.79), largely driven by changes in the relative abundances of Acidobacteria, Actinobacteria, and Bacteroidetes across the range of soil pHs. In addition, soil pH explains a significant portion of the variability associated with observed changes in the phylogenetic structure within each dominant lineage. The overall phylogenetic diversity of the bacterial communities was also correlated with soil pH (R2 = 0.50), with peak diversity in soils with near-neutral pHs. Together, these results suggest that the structure of soil bacterial communities is predictable, to some degree, across larger spatial scales, and the effect of soil pH on bacterial community composition is evident at even relatively coarse levels of taxonomic resolution.

scholarly journals Characterization of bacterioplankton communities and quantification of organic carbon pools off the Galapagos Archipelago under contrasting environmental conditions

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e5984 ◽  
Author(s):  
Nataly Carolina Guevara Campoverde ◽  
Christiane Hassenrück ◽  
Pier Luigi Buttigieg ◽  
Astrid Gärdes
Keyword(s):  
Organic Carbon ◽  
Carbon Cycle ◽  
Dissolved Organic Carbon ◽  
Bacterial Communities ◽  
Carbon Pools ◽  
Aggregate Formation ◽  
Galapagos Archipelago ◽  
Carbon Concentrations ◽  
Bacterioplankton Communities

Bacteria play a crucial role in the marine carbon cycle, contributing to the production and degradation of organic carbon. Here, we investigated organic carbon pools, aggregate formation, and bacterioplankton communities in three contrasting oceanographic settings in the Galapagos Archipelago. We studied a submarine CO2 vent at Roca Redonda (RoR), an upwelling site at Bolivar Channel (BoC) subjected to a weak El Niño event at the time of sampling in October 2014, as well as a site without volcanic or upwelling influence at Cowley Islet (CoI). We recorded physico-chemical parameters, and quantified particulate and dissolved organic carbon, transparent exopolymeric particles, and the potential of the water to form larger marine aggregates. Free-living and particle-attached bacterial communities were assessed via 16S rRNA gene sequencing. Both RoR and BoC exhibited temperatures elevated by 1–1.5 °C compared to CoI. RoR further experienced reduced pH between 6.8 and 7.4. We observed pronounced differences in organic carbon pools at each of the three sites, with highest dissolved organic carbon concentrations at BoC and RoR, and highest particulate organic carbon concentrations and aggregate formation at BoC. Bacterioplankton communities at BoC were dominated by opportunistic copiotrophic taxa, such as Alteromonas and Roseobacter, known to thrive in phytoplankton blooms, as opposed to oligotrophic taxa dominating at CoI, such as members of the SAR11 clade. Therefore, we propose that bacterial communities were mainly influenced by the availability of organic carbon at the investigated sites. Our study provides a comprehensive characterization of organic carbon pools and bacterioplankton communities, highlighting the high heterogeneity of various components of the marine carbon cycle around the Galapagos Archipelago.

scholarly journals Effect of Acidified Versus Frozen Storage on Marine Dissolved Organic Carbon Concentration and Isotopic Composition

Radiocarbon ◽  
2016 ◽  
Vol 59 (3) ◽  
pp. 843-857 ◽  
Author(s):  
Brett D Walker ◽  
Sheila Griffin ◽  
Ellen R M Druffel
Keyword(s):  
Organic Carbon ◽  
Dissolved Organic Carbon ◽  
Standard Procedure ◽  
Frozen Storage ◽  
Open Ocean ◽  
Field Collection ◽  
Organic Carbon Concentration ◽  
Large Numbers ◽  
Logistical Problem

AbstractThe standard procedure for storing/preserving seawater dissolved organic carbon (DOC) samples after field collection is by freezing (–20°C) until future analysis can be made. However, shipping and receiving large numbers of these samples without thawing presents a significant logistical problem and large monetary expense. Access to freezers can also be limited in remote field locations. We therefore test an alternative method of preserving and storing samples for the measurement of DOC concentrations ([DOC]), stable carbon (δ13C), and radiocarbon (as ∆14C) isotopic values via UV photooxidation (UVox). We report a total analytical reproducibility of frozen DOC samples to be [DOC]±1.3 µM, ∆14C±9.4‰, and δ13C±0.1‰, comparable to previously reported results (Druffel et al. 2013). Open Ocean DOC frozen versus acidified duplicates were on average offset by ∆DOC±1.1 µM, ∆∆14C± –1.3‰, and ∆δ13C± –0.1‰. Coastal Ocean frozen vs. acidified sample replicates, collected as part of a long-term (380-day) storage experiment, had larger, albeit consistent offsets of ∆DOC±2.2 µM, ∆∆14C±1.5‰, and ∆δ13C± –0.2‰. A simple isotopic mass balance of changes in [DOC], ∆14C, and δ13C values reveals loss of semi-labile DOC (2.2±0.6 µM, ∆14C=–94±105‰, δ13C=–27±10‰; n=4) and semi-recalcitrant DOC (2.4±0.7 µM, ∆14C=–478±116‰, δ13C=–23.4±3.0‰; n=3) in Coastal and Open Ocean acidified samples, respectively.

scholarly journals Small-scale drinking water treatment unit of filtration and UV disinfection for remote area

2020 ◽  
Vol 20 (6) ◽  
pp. 2106-2118
Author(s):  
Kassim Chabi ◽  
Jie Zeng ◽  
Lizheng Guo ◽  
Xi Li ◽  
Chengsong Ye ◽  
...  
Keyword(s):  
Water Quality ◽  
Drinking Water ◽  
Water Treatment ◽  
Organic Carbon ◽  
Dissolved Organic Carbon ◽  
Bacterial Community Composition ◽  
Drinking Water Treatment ◽  
Small Scale ◽  
Treatment Unit ◽  
Remote Areas

Abstract People in remote areas are still drinking surface water that may contain certain pollutants including harmful microorganisms and chemical compounds directly without any pretreatment. In this study, we have designed and operated a pilot-scale drinking water treatment unit as part of our aim to find an economic and easily operable technology for providing drinking water to people in those areas. Our small-scale treatment unit contains filtration and disinfection (UV–C irradiation) stages to remove pollutants from source water. The water quality index was determined based on various parameters such as pH, temperature, dissolved oxygen, nitrate, nitrite, ammonium, phosphorus, dissolved organic carbon and bacteria. Water and media samples after DNA extraction were sequenced using Illumina MiSeq throughput sequencing for the determination of bacterial community composition. After the raw water treatment, the reduction of bacteria concentration ranged from 1 to 2 log10. The average removal of the turbidity, ammonium, nitrite, phosphorus and dissolved organic carbon reached up to 95.33%, 85.71%, 100%, 28.57%, and 45%, respectively. In conclusion, multiple biological stages in our designed unit showed an improvement of the drinking water quality. The designed drinking treatment unit produces potable water meeting standards at a lower cost of operation and it can be used in remote areas.

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