scholarly journals Draft Genome Sequence of Pseudomonas stutzeri ODKF13, Isolated from Farmland Soil in Alvin, Texas

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Rupa Iyer ◽  
Ashish Damania
Keyword(s):  
Nitrogen Fixation ◽  
Genome Sequence ◽  
Draft Genome ◽  
Pseudomonas Stutzeri ◽  
Draft Genome Sequence ◽  
Naphthalene Degradation ◽  
Farmland Soil

Pseudomonas stutzeri ODKF13 is a bacterial microorganism isolated from farmland soil in Alvin, Texas. This strain is notable for its naphthalene degradation and nitrogen fixation pathways and for its characterization as an organophosphate degrader of phosphotriester and phosphorothioate insecticides.

scholarly journals Reconstruction of a Nearly Complete Pseudomonas Draft Genome Sequence from a Coalbed Methane-Produced Water Metagenome

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Daniel E. Ross ◽  
Djuna Gulliver
Keyword(s):  
Nitrogen Fixation ◽  
Microbial Community ◽  
Genome Sequence ◽  
Coalbed Methane ◽  
Produced Water ◽  
Draft Genome ◽  
Pseudomonas Stutzeri ◽  
Draft Genome Sequence ◽  
Degradation Pathways ◽  
Naphthalene Degradation

The draft genome sequence of Pseudomonas stutzeri strain K35 was separated from a metagenome derived from a produced water microbial community of a coalbed methane well. The genome encodes a complete nitrogen fixation pathway and the upper and lower naphthalene degradation pathways.

scholarly journals Draft Genome Sequence of Thermophilic Halotolerant Aeribacillus pallidus TD1, Isolated from Tao Dam Hot Spring, Thailand

2019 ◽  
Vol 8 (17) ◽  
Author(s):  
Wariya Yamprayoonswat ◽  
Satapanawat Sittihan ◽  
Watthanachai Jumpathong ◽  
Montri Yasawong
Keyword(s):  
Genome Sequence ◽  
Hot Spring ◽  
Draft Genome ◽  
Thermophilic Bacterium ◽  
Draft Genome Sequence ◽  
Naphthalene Dioxygenase ◽  
Content Type ◽  
Naphthalene Degradation ◽  
Key Enzyme

Aeribacillus pallidus TD1 is a thermophilic bacterium isolated from a hot spring in Thailand. The genome sequence of A. pallidus TD1 contains a gene-encoded naphthalene dioxygenase, which is a key enzyme for naphthalene degradation.

scholarly journals Draft Genome Sequence of Organophosphate-Degrading Ochrobactrum anthropi FRAF13

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Rupa Iyer ◽  
Ashish Damania
Keyword(s):  
Antibiotic Resistance ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Ochrobactrum Anthropi ◽  
Organophosphate Compounds ◽  
Farmland Soil

Ochrobactrum anthropi FRAF13 was isolated from farmland soil in Jersey Village, Texas. FRAF13 is a bacterial microorganism with broad antibiotic resistance that possesses a number of metal-dependent β-lactam enzymes with secondary phosphotriesterase activity that can initiate the breakdown of organophosphate compounds.

scholarly journals Draft Genome Sequence of Rhizobium sp. GHKF11, Isolated from Farmland Soil in Pecan Grove, Texas

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Rupa Iyer ◽  
Ashish Damania
Keyword(s):  
Heavy Metal ◽  
Genome Sequence ◽  
Bacterial Strain ◽  
Draft Genome ◽  
Heavy Metal Resistance ◽  
Metal Resistance ◽  
Draft Genome Sequence ◽  
Pesticide Degradation ◽  
Farmland Soil ◽  
Rhizobium Sp

Rhizobium sp. GHKF11 is an organophosphate-degrading bacterial strain that was isolated from farmland soil in Pecan Grove, Texas, USA. In addition to a capacity for pesticide degradation, GHKF11 shares conserved traits with other Rhizobium spp., including heavy metal resistance and transport genes that may have significant agricultural biotechnology applications.

scholarly journals Draft Genome Sequence of Tepidimonas taiwanensis Strain MB2, a Chemolithotrophic Thermophile Isolated from a Hot Spring in Central India

2016 ◽  
Vol 4 (1) ◽  
Author(s):  
Darshan B. Dhakan ◽  
Rituja Saxena ◽  
Nikhil Chaudhary ◽  
Vineet K. Sharma
Keyword(s):  
Nitrogen Fixation ◽  
Organic Acids ◽  
Genome Sequence ◽  
Hot Spring ◽  
Sulfur Metabolism ◽  
Draft Genome ◽  
Central India ◽  
Draft Genome Sequence ◽  
Ammonia Metabolism

Tepidimonas taiwanensis strain MB2 is a thermophile isolated from a hot spring located in central India. Here, we report a 28,49,160 bp draft genome sequence of Tepidimonas taiwanensis MB2. The genome shows properties of sulfur metabolism, nitrogen fixation, ammonia metabolism, assimilation of organic acids, and a wide variety of proteases.

scholarly journals Draft Genome Sequence of the Toluene-Degrading Pseudomonas stutzeri Strain ST-9

2015 ◽  
Vol 3 (3) ◽  
Author(s):  
Margarita Gomila ◽  
Antonio Busquets ◽  
Elena García-Valdés ◽  
Esti Michael ◽  
Rivka Cahan ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Pseudomonas Stutzeri ◽  
Draft Genome Sequence

scholarly journals Draft Genome Sequence of Burkholderia vietnamiensis Strain RS1, a Nitrogen-Fixing Endophyte Isolated from Sweet Potato

2018 ◽  
Vol 7 (3) ◽  
Author(s):  
Rina Shinjo ◽  
Kazuma Uesaka ◽  
Kunio Ihara ◽  
Shunsuke Sakazaki ◽  
Katsuya Yano ◽  
...  
Keyword(s):  
Nitrogen Fixation ◽  
Sweet Potato ◽  
Genome Sequence ◽  
Draft Genome ◽  
Endophytic Bacterium ◽  
Draft Genome Sequence ◽  
Nitrogen Fixing ◽  
Content Type ◽  
Burkholderia Vietnamiensis ◽  
Tuberous Roots

Burkholderia vietnamiensis strain RS1 is an endophytic bacterium with nitrogen-fixing ability that was isolated from tuberous roots of sweet potato. Here, we present its draft genome of 6,542,727 bases that contains a cluster of genes associated with nitrogen fixation.

scholarly journals Draft Genome Sequence of Pseudomonas stutzeri Strain KMS 55, an Endophytic Diazotroph Isolated from Rice Roots

2017 ◽  
Vol 5 (40) ◽  
Author(s):  
Kannepalli Annapurna ◽  
Venkadasamy Govindasamy ◽  
Meenakshi Sharma ◽  
Yuvika Rajrana ◽  
Karivaradharajan Swarnalakshmi ◽  
...  
Keyword(s):  
Nitrogen Fixation ◽  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
Pseudomonas Stutzeri ◽  
Single Copy ◽  
23S Rrna ◽  
Protein Coding ◽  
Content Type ◽  
A Genome

ABSTRACT Pseudomonas stutzeri strain KMS 55 (MTCC 12703) is an isolate from the root tissues of rice (Oryza sativa L.) that displays a high biological nitrogen fixation ability. Here, we report the complete genome sequence of this strain, which contains 4,637,820 bp, 4,289 protein-coding genes, 5,006 promoter sequences, 62 tRNAs, a single copy of 5S-16S-23S rRNA, and a genome average GC content of 51.18%. Analysis of the ~4.64-Mb genome sequence will give support to increased understanding of the genetic determinants of host range, endophytic colonization behavior, endophytic nitrogen fixation, and other plant-beneficial roles of Pseudomonas stutzeri.

scholarly journals Draft Genome Sequence of Bradyrhizobium elkanii Strain SEMIA 938, Used in Commercial Inoculants for Lupinus spp. in Brazil

2019 ◽  
Vol 8 (28) ◽  
Author(s):  
Mariangela Hungria ◽  
Jakeline Renata Marçon Delamuta ◽  
Renan Augusto Ribeiro ◽  
Marco Antonio Nogueira
Keyword(s):  
Nitrogen Fixation ◽  
Genome Sequence ◽  
Draft Genome ◽  
High Capacity ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Nodulation Genes ◽  
Bradyrhizobium Elkanii ◽  
Commercial Inoculants

Due to its high capacity for nitrogen fixation, strain SEMIA 938 is used in commercial inoculants for lupins in Brazil. Its genome was estimated at 8,780,064 bp and indicates that it belongs to the Bradyrhizobium elkanii species, while the analysis of nodulation genes classifies the strain in the symbiovar sojae.

scholarly journals Draft Genome Sequence of Paraburkholderia sp. UYCP14C, a Rhizobium Strain Isolated from Root Nodules of Calliandra parvifolia

2019 ◽  
Vol 8 (16) ◽  
Author(s):  
Mauricio Langleib ◽  
Martín Beracochea ◽  
María Zabaleta ◽  
Federico Battistoni ◽  
José Sotelo-Silveira ◽  
...  
Keyword(s):  
Nitrogen Fixation ◽  
Genome Size ◽  
Genome Sequence ◽  
Root Nodules ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Rhizobium Strain ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type

Here, we present the draft genome sequence of strain UYCP14C, a rhizobium isolated from Calliandra parvifolia nodules. The assembled genome size was around 9.8 million bp, containing 9,031 predicted protein-coding sequences, including several symbiotic and nitrogen fixation genes.

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