scholarly journals Draft Genome Sequence of Hydrocarbon-Degrading Staphylococcus saprophyticus Strain CNV2, Isolated from Crude Oil-Contaminated Soil from the Noonmati Oil Refinery, Guwahati, Assam, India

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Arghya Mukherjee ◽  
Bobby Chettri ◽  
James S. Langpoklakpam ◽  
Arvind K. Singh ◽  
Dhrubajyoti Chattopadhyay
Keyword(s):  
Crude Oil ◽  
Genome Sequence ◽  
Contaminated Soil ◽  
Draft Genome ◽  
Oil Refinery ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
First Report ◽  
Staphylococcus Saprophyticus

Here, we report the 2.6 Mb draft genome sequence of hydrocarbon-degrading Staphylococcus saprophyticus strain CNV2, isolated from oil-contaminated soil in Guwahati, India. CNV2 contains 2,545 coding sequences and has a G+C content of 33.2%. This is the first report of the genome sequence of an S. saprophyticus adapted to an oil-contaminated environment.

scholarly journals Draft Genome Sequence of Hydrocarbon-DegradingEnterobacter cloacaeStrain S1:CND1, Isolated from Crude Oil-Contaminated Soil from the Noonmati Oil Refinery, Guwahati, Assam, India

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Arghya Mukherjee ◽  
Bobby Chettri ◽  
James S. Langpoklakpam ◽  
Arvind K. Singh ◽  
Dhrubajyoti Chattopadhyay
Keyword(s):  
Crude Oil ◽  
Genome Sequence ◽  
Contaminated Soil ◽  
Draft Genome ◽  
Enterobacter Cloacae ◽  
Oil Refinery ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
First Report

We report here the 4.57-Mb draft genome sequence of hydrocarbon-degradingEnterobacter cloacaestrain S1:CND1 isolated from oil-contaminated soil in Guwahati, India. S1:CND1 contains 4,205 coding sequences and has a G+C content of 57.45%. This is the first report of the genome sequence of anE. cloacaeadapted to an oil-contaminated environment.

scholarly journals Draft Genome Sequence of the Hydrocarbon-Degrading Bacterium Acinetobacter pittii Strain ABC Isolated from Noonmati Refinery, Assam, India

2017 ◽  
Vol 5 (44) ◽  
Author(s):  
Arvind Kumar Singh ◽  
Bobby Chettri ◽  
Arpita Ghosh ◽  
Surendra K. Chikara ◽  
Timir Tripathi
Keyword(s):  
Genome Sequence ◽  
Contaminated Soil ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
Content Type ◽  
First Report ◽  
Degrading Bacterium ◽  
Acinetobacter Pittii

ABSTRACT We report here the 3.84-Mb draft genome sequence of hydrocarbon-degrading Acinetobacter pittii strain ABC isolated from oil-contaminated soil in Guwahati, India. The genome sequence contains 3,602 coding sequences and a G+C content of 38.83%. This is the first report of the genome sequence of an Acinetobacter pittii from an oil-contaminated environment.

scholarly journals Draft Genome Sequence of Serratia sp. Strain S1B, Isolated from Mercury-Contaminated Soil

2018 ◽  
Vol 6 (25) ◽  
Author(s):  
Ashish Pathak ◽  
Rajneesh Jaswal ◽  
Xiaoyu Xu ◽  
Ashvini Chauhan
Keyword(s):  
Genome Sequence ◽  
Contaminated Soil ◽  
Draft Genome ◽  
Genomic Islands ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
Content Type ◽  
Biodegradative Genes ◽  
Environmental Relevance

ABSTRACT We report here the draft genome sequence of Serratia sp. strain S1B, comprising 7,710,841 bases, 7,075 coding sequences, a G+C content of 45.9%, and 138 RNAs. Notably, a repertoire of biodegradative genes, several occurring on genomic islands, was also identified, which enhances our understanding of the environmental relevance of Serratia spp.

scholarly journals Draft Genome Sequence of Pseudomonas sp. Strain B1, Isolated from a Contaminated Sediment

2018 ◽  
Vol 6 (25) ◽  
Author(s):  
Ashish Pathak ◽  
Rajneesh Jaswal ◽  
Paul Stothard ◽  
Scott Brooks ◽  
Ashvini Chauhan
Keyword(s):  
Genome Sequence ◽  
Contaminated Soil ◽  
Draft Genome ◽  
Genomic Islands ◽  
Draft Genome Sequence ◽  
Pseudomonas Sp ◽  
Contaminated Sediment ◽  
Coding Sequences ◽  
Content Type ◽  
Biodegradative Genes

ABSTRACT The draft genome sequence of Pseudomonas sp. strain B1, isolated from a contaminated soil, is reported. The genome comprises 6,706,934 bases, 6,059 coding sequences, and 70 RNAs and has a G+C content of 60.3%. A suite of biodegradative genes, many located on genomic islands, were identified from strain B1, further enhancing our understanding of the versatile pseudomonads.

scholarly journals Draft Genome Sequence of Leifsonia sp. Strain NCR5, a Rhizobacterium Isolated from Cadmium-Contaminated Soil

2017 ◽  
Vol 5 (23) ◽  
Author(s):  
Eleonora Egidi ◽  
Jennifer L. Wood ◽  
Edward M. Fox ◽  
Wuxing Liu ◽  
Ashley E. Franks
Keyword(s):  
Genome Sequence ◽  
Contaminated Soil ◽  
De Novo ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Gram Positive ◽  
Coding Sequences ◽  
Cadmium Contaminated Soil

ABSTRACT We report here the draft genome sequence of Leifsonia sp. strain NCR5, a Gram-positive actinomycete isolated from Carpobrotus rossii (Haw.) Schwantes rhizosphere. The de novo genome of Leifsonia sp. strain NCR5 was assembled with 69 scaffolds and a G+C content of 69%, was 4.2 Mb in length, and contained 3,952 coding sequences.

scholarly journals Draft Genome Sequence of Fusarium equiseti K3, a Fungal Species Isolated from Hexachlorocyclohexane-Contaminated Soil

2021 ◽  
Vol 10 (47) ◽  
Author(s):  
Nelson Khan ◽  
Rodolfo Brizola Toscan ◽  
Accadius Lunayo ◽  
Benson Wamalwa ◽  
Edward Muge ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Contaminated Soil ◽  
Draft Genome ◽  
Fungal Species ◽  
Draft Genome Sequence ◽  
Fusarium Equiseti ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type

We present the draft genome sequence of Fusarium equiseti strain K3, a fungus isolated from a hexachlorocyclohexane (HCH)-contaminated soil (Kitengela, Kenya). The 37.88-Mb draft genome sequence consists of 206 contigs, 12,311 predicted protein-coding sequences, and 261 tRNA sequences.

scholarly journals Draft Genome Sequence of Urease-Producing Pseudorhodobacter sp. Strain E13, Isolated from the Yellow Sea in Gunsan, South Korea

2019 ◽  
Vol 8 (23) ◽  
Author(s):  
Si Chul Kim ◽  
Hyo Jung Lee
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Yellow Sea ◽  
Draft Genome ◽  
The Yellow Sea ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type

Here, we report the draft genome sequence of Pseudorhodobacter sp. strain E13, a Gram-negative, aerobic, nonflagellated, and rod-shaped bacterium which was isolated from the Yellow Sea in South Korea. The assembled genome sequence is 3,878,578 bp long with 3,646 protein-coding sequences in 159 contigs.

scholarly journals Draft Genome Sequence of Leifsonia xyli subsp. xyli Strain gdw1

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Jihua Wang ◽  
Li Wang ◽  
Gan Cao ◽  
Muqing Zhang ◽  
Ying Guo
Keyword(s):  
Genome Sequence ◽  
Genetic Improvement ◽  
De Novo ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
Ratoon Stunting Disease

Here, we report the draft genome sequence of Leifsonia xyli subsp. xyli strain gdw1, isolated from the stem of Badila sugarcane located at the Guangdong Key Laboratory for Crops Genetic Improvement (Guanzhou, China), that causes ratoon stunting disease of sugarcane. The de novo genome of Leifsonia xyli subsp. xyli was assembled with 48 scaffolds and a G+C content of 67.68%, and contained 2.6 Mb bp and 2,838 coding sequences.

scholarly journals Draft Genome Sequence of Enterococcus faecalis DD14, a Bacteriocinogenic Lactic Acid Bacterium with Anti-Clostridium Activity

2017 ◽  
Vol 5 (30) ◽  
Author(s):  
Yanath Belguesmia ◽  
Valérie Leclère ◽  
Matthieu Duban ◽  
Eric Auclair ◽  
Djamel Drider
Keyword(s):  
Lactic Acid ◽  
Lactic Acid Bacterium ◽  
Enterococcus Faecalis ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
Content Type ◽  
Gram Positive Bacteria ◽  
Healthy Newborn

ABSTRACT We report the draft genome sequence of Enterococcus faecalis DD14, a strain isolated from meconium of a healthy newborn at Roubaix Hospital (France). The strain displayed antagonism against a set of Gram-positive bacteria through concomitant production of lactic acid and bacteriocin. The genome has a size of 2,893,365 bp and a 37.3% G+C ratio and is predicted to contain at least 2,755 coding sequences and 62 RNAs.

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