scholarly journals Complete Genome Sequence of Pseudoalteromonas piscicida Strain DE2-B, a Bacterium with Broad Inhibitory Activity toward Human and Fish Pathogens

2017 ◽  
Vol 5 (33) ◽  
Author(s):  
Gary P. Richards ◽  
David S. Needleman ◽  
Michael A. Watson
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Inhibitory Activity ◽  
Complete Genome ◽  
Antibacterial Properties ◽  
Halophilic Bacterium ◽  
Fish Pathogens ◽  
Content Type ◽  
Multiple Genes ◽  
Genes Encoding

ABSTRACT Pseudoalteromonas piscicida strain DE2-B is a halophilic bacterium which has broad inhibitory activity toward vibrios and other human and fish pathogens. We report the first closed genome sequence for this species, which consists of two chromosomes (4,128,210 and 1,188,838 bp). Annotation revealed multiple genes encoding proteases with potential antibacterial properties.

scholarly journals Complete Genome Sequence and Annotation of Campylobacter jejuni YH003, Isolated from Retail Chicken

2020 ◽  
Vol 9 (4) ◽  
Author(s):  
Yiping He ◽  
Sue Reed ◽  
Terence P. Strobaugh
Keyword(s):  
Campylobacter Jejuni ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Vi Secretion System ◽  
Multidrug Efflux ◽  
Content Type ◽  
Resistance Factors ◽  
Genes Encoding ◽  
Multidrug Efflux System

The complete genome sequence of Campylobacter jejuni YH003, isolated from retail chicken, was determined using PacBio and Illumina technologies. The assembled genome is 1,743,985 bp (G+C content of 30.3%). Genome annotation revealed several genes encoding virulence and antibiotic resistance factors, including a type VI secretion system, cytolethal distending toxins, and a multidrug efflux system.

scholarly journals Complete Genome Sequence of Bacillus vallismortis NBIF-001, a Novel Strain from Shangri-La, China, That Has High Activity against Fusarium oxysporum

2017 ◽  
Vol 5 (48) ◽  
Author(s):  
Xiaoyan Liu ◽  
Yong Min ◽  
Daye Huang ◽  
Ronghua Zhou ◽  
Wei Fang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Positive Bacterium ◽  
Protein Coding ◽  
Content Type ◽  
Number Of Genes ◽  
Genes Encoding ◽  
Bacillus Vallismortis ◽  
Rna Genes

ABSTRACT Bacillus vallismortis NBIF-001, a Gram-positive bacterium, was isolated from soil in Shangri-La, China. Here, we provide the complete genome sequence of this bacterium, which has a 3,929,787-bp-long genome, including 4,030 protein-coding genes and 195 RNA genes. This strain possesses a number of genes encoding virulence factors of pathogens.

scholarly journals Complete Genome Sequence of Actinomyces hongkongensis HKU8T Isolated from Human Blood

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Yan-xia Gao ◽  
Yu-yan Zhou ◽  
Ying Xie ◽  
Man Wang ◽  
Shu-juan Wang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Human Blood ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Human Diseases ◽  
Circular Chromosome ◽  
Content Type ◽  
Genes Encoding

ABSTRACT Members of the genus Actinomyces are strongly associated with human diseases. We present here the complete genome sequence of Actinomyces hongkongensis HKU8T, which consists of one circular chromosome. The strain characteristically contains various genes encoding for enzymes involved in arylamidase utilization.

scholarly journals Complete Genome Sequence of Klebsiella pneumoniae Myophage Mulock

2019 ◽  
Vol 8 (46) ◽  
Author(s):  
Lorna Min ◽  
Lauren Lessor ◽  
Chandler O’Leary ◽  
Rachele Bonasera ◽  
Jason Gill ◽  
...  
Keyword(s):  
Klebsiella Pneumoniae ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Opportunistic Pathogen ◽  
Phage Lambda ◽  
Content Type ◽  
Hospital Acquired Infections ◽  
Genes Encoding ◽  
Hospital Acquired

Klebsiella pneumoniae is an opportunistic pathogen associated with hospital-acquired infections. This report describes the complete genome of the K. pneumoniae myophage Mulock, which appears to be a temperate myophage distantly related to other Klebsiella myophages in morphogenesis genes and is partially syntenic with the canonical Escherichia phage lambda in genes encoding lambda-like functions.

scholarly journals Complete Genome Sequence of Paludibaculum fermentans P105T, a Facultatively Anaerobic Acidobacterium Capable of Dissimilatory Fe(III) Reduction

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Svetlana N. Dedysh ◽  
Alexey V. Beletsky ◽  
Irina S. Kulichevskaya ◽  
Andrey V. Mardanov ◽  
Nikolai V. Ravin
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Content Type ◽  
Facultatively Anaerobic ◽  
Multiple Genes ◽  
Membrane Bound

ABSTRACT Paludibaculum fermentans P105T is a facultatively anaerobic heterotroph of the phylum Acidobacteria which is capable of dissimilatory Fe(III) reduction. This bacterium is a common inhabitant of wetlands and groundwater bodies. The finished genome of strain P105T is 9.53 Mb in size and contains multiple genes coding for membrane-bound multiheme cytochromes.

scholarly journals Complete Genome Sequence of Halomonas hydrothermalis Strain Slthf2, a Halophilic Bacterium Isolated from a Deep-Sea Hydrothermal-Vent Environment

2020 ◽  
Vol 9 (15) ◽  
Author(s):  
Naota Takeyama ◽  
Muyang Huang ◽  
Kensuke Sato ◽  
Josephine Galipon ◽  
Kazuharu Arakawa
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Deep Sea ◽  
Complete Genome ◽  
Gc Content ◽  
Halophilic Bacterium ◽  
Negative Bacterium ◽  
Content Type ◽  
South Pacific Ocean ◽  
A Genome

Halomonas hydrothermalis strain Slthf2 is a Gram-negative bacterium isolated from low-temperature hydrothermal fluids in South Pacific Ocean vent fields located at 2,580-m depth. Here, we report the complete genome sequence of this strain, which has a genome size of 4.12 Mb, with a GC content of 53.2%.

scholarly journals Complete Genome Sequence of a Dickeya fangzhongdai Type Strain Causing Bleeding Canker of Pear Tree Trunks

2018 ◽  
Vol 6 (20) ◽  
Author(s):  
Yuqiang Zhao ◽  
Yanli Tian ◽  
Xiang Li ◽  
Baishi Hu
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Pyrus Pyrifolia ◽  
Protein Coding ◽  
Content Type ◽  
Pear Tree ◽  
Genes Encoding ◽  
Pear Trees ◽  
Rna Genes

ABSTRACT Dickeya fangzhongdai DSM 101947T was isolated from pear trees (Pyrus pyrifolia) in Zhejiang Province, China, and is the causal agent of bleeding canker, a devastating disease of pear trees. Here, we provide the complete genome sequence of this bacterium, which has a 5,027,163-bp-long genome, including 4,375 protein-coding genes and 100 RNA genes. This strain possesses a number of genes encoding virulence factors of pathogens.

scholarly journals Complete Genome Sequence of Halomonas olivaria, a Moderately Halophilic Bacterium Isolated from Olive Processing Effluents, Obtained by Nanopore Sequencing

2019 ◽  
Vol 8 (18) ◽  
Author(s):  
Shohei Nagata ◽  
Konosuke M. Ii ◽  
Tomoya Tsukimi ◽  
Masahiro C. Miura ◽  
Josephine Galipon ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Halophilic Bacterium ◽  
Nitrate Respiration ◽  
Negative Bacterium ◽  
Protein Coding ◽  
Content Type ◽  
Moderately Halophilic ◽  
Moderately Halophilic Bacterium

Here, we report the complete genome sequence of Halomonas olivaria strain TYRC17, a moderately halophilic, Gram-negative bacterium that was isolated from olive processing effluents. The 5-Mbp genome consists of 7,375 protein-coding sequences, including a variety of genes involved in tyrosol metabolism, nitrate respiration, and the production of polysaccharides.

scholarly journals Genome Sequence of Lactobacillus sakei LK-145 Isolated from a Japanese Sake Cellar as a High Producer of d-Amino Acids

2017 ◽  
Vol 5 (33) ◽  
Author(s):  
Shiro Kato ◽  
Tadao Oikawa
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Lactobacillus Sakei ◽  
Content Type ◽  
Genes Encoding ◽  
Amino Acid Racemase

ABSTRACT This announcement reports the complete genome sequence of strain LK-145 of Lactobacillus sakei isolated from a Japanese sake cellar as a potent strain for the production of large amounts of d-amino acids. Three putative genes encoding an amino acid racemase were identified.

scholarly journals Genome Sequence of a Klebsiella pneumoniae NDM-1 Producer Isolated in Quebec City

2020 ◽  
Vol 9 (3) ◽  
Author(s):  
Maxime Déraspe ◽  
Jean Longtin ◽  
Paul H. Roy
Keyword(s):  
Klebsiella Pneumoniae ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Quebec City ◽  
Content Type ◽  
Beta Lactamases ◽  
Genes Encoding

We report here the complete genome sequence of Klebsiella pneumoniae CCRI-22199, isolated from a patient from India treated in Quebec City, Canada. Genes encoding beta-lactamases NDM-1 and CTX-M-15 were identified on two distinct plasmids. While the chromosome is similar to that of strain BAA-2146, CCRI-22199 provides a further example of rearrangements in plasmids.

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