scholarly journals Genome Sequence of Lactobacillus sakei LK-145 Isolated from a Japanese Sake Cellar as a High Producer of d-Amino Acids

2017 ◽  
Vol 5 (33) ◽  
Author(s):  
Shiro Kato ◽  
Tadao Oikawa
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Lactobacillus Sakei ◽  
Content Type ◽  
Genes Encoding ◽  
Amino Acid Racemase

ABSTRACT This announcement reports the complete genome sequence of strain LK-145 of Lactobacillus sakei isolated from a Japanese sake cellar as a potent strain for the production of large amounts of d-amino acids. Three putative genes encoding an amino acid racemase were identified.

scholarly journals Genome Sequence of Leuconostoc mesenteroides LK-151 Isolated from a Japanese Sake Cellar as a High Producer of d-Amino Acids

2017 ◽  
Vol 5 (30) ◽  
Author(s):  
Shiro Kato ◽  
Tadao Oikawa
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Acid Production ◽  
Leuconostoc Mesenteroides ◽  
Amino Acid Production ◽  
Content Type

ABSTRACT Here, we report the complete genome sequence of strain LK-151 of Leuconostoc mesenteroides, which was isolated from a Japanese sake cellar and has the potential to produce large amounts of d-amino acids, namely, d-Ala and d-Glu. The genome contains 4 genes related to d-amino acid production.

scholarly journals Complete Genome Sequence and Annotation of Campylobacter jejuni YH003, Isolated from Retail Chicken

2020 ◽  
Vol 9 (4) ◽  
Author(s):  
Yiping He ◽  
Sue Reed ◽  
Terence P. Strobaugh
Keyword(s):  
Campylobacter Jejuni ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Vi Secretion System ◽  
Multidrug Efflux ◽  
Content Type ◽  
Resistance Factors ◽  
Genes Encoding ◽  
Multidrug Efflux System

The complete genome sequence of Campylobacter jejuni YH003, isolated from retail chicken, was determined using PacBio and Illumina technologies. The assembled genome is 1,743,985 bp (G+C content of 30.3%). Genome annotation revealed several genes encoding virulence and antibiotic resistance factors, including a type VI secretion system, cytolethal distending toxins, and a multidrug efflux system.

scholarly journals Complete Genome Sequence of Bacillus vallismortis NBIF-001, a Novel Strain from Shangri-La, China, That Has High Activity against Fusarium oxysporum

2017 ◽  
Vol 5 (48) ◽  
Author(s):  
Xiaoyan Liu ◽  
Yong Min ◽  
Daye Huang ◽  
Ronghua Zhou ◽  
Wei Fang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Positive Bacterium ◽  
Protein Coding ◽  
Content Type ◽  
Number Of Genes ◽  
Genes Encoding ◽  
Bacillus Vallismortis ◽  
Rna Genes

ABSTRACT Bacillus vallismortis NBIF-001, a Gram-positive bacterium, was isolated from soil in Shangri-La, China. Here, we provide the complete genome sequence of this bacterium, which has a 3,929,787-bp-long genome, including 4,030 protein-coding genes and 195 RNA genes. This strain possesses a number of genes encoding virulence factors of pathogens.

scholarly journals Complete Genome Sequence of Actinomyces hongkongensis HKU8T Isolated from Human Blood

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Yan-xia Gao ◽  
Yu-yan Zhou ◽  
Ying Xie ◽  
Man Wang ◽  
Shu-juan Wang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Human Blood ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Human Diseases ◽  
Circular Chromosome ◽  
Content Type ◽  
Genes Encoding

ABSTRACT Members of the genus Actinomyces are strongly associated with human diseases. We present here the complete genome sequence of Actinomyces hongkongensis HKU8T, which consists of one circular chromosome. The strain characteristically contains various genes encoding for enzymes involved in arylamidase utilization.

scholarly journals Complete Genome Sequence of Pseudoalteromonas piscicida Strain DE2-B, a Bacterium with Broad Inhibitory Activity toward Human and Fish Pathogens

2017 ◽  
Vol 5 (33) ◽  
Author(s):  
Gary P. Richards ◽  
David S. Needleman ◽  
Michael A. Watson
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Inhibitory Activity ◽  
Complete Genome ◽  
Antibacterial Properties ◽  
Halophilic Bacterium ◽  
Fish Pathogens ◽  
Content Type ◽  
Multiple Genes ◽  
Genes Encoding

ABSTRACT Pseudoalteromonas piscicida strain DE2-B is a halophilic bacterium which has broad inhibitory activity toward vibrios and other human and fish pathogens. We report the first closed genome sequence for this species, which consists of two chromosomes (4,128,210 and 1,188,838 bp). Annotation revealed multiple genes encoding proteases with potential antibacterial properties.

scholarly journals Complete Genome Sequence of Klebsiella pneumoniae Myophage Mulock

2019 ◽  
Vol 8 (46) ◽  
Author(s):  
Lorna Min ◽  
Lauren Lessor ◽  
Chandler O’Leary ◽  
Rachele Bonasera ◽  
Jason Gill ◽  
...  
Keyword(s):  
Klebsiella Pneumoniae ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Opportunistic Pathogen ◽  
Phage Lambda ◽  
Content Type ◽  
Hospital Acquired Infections ◽  
Genes Encoding ◽  
Hospital Acquired

Klebsiella pneumoniae is an opportunistic pathogen associated with hospital-acquired infections. This report describes the complete genome of the K. pneumoniae myophage Mulock, which appears to be a temperate myophage distantly related to other Klebsiella myophages in morphogenesis genes and is partially syntenic with the canonical Escherichia phage lambda in genes encoding lambda-like functions.

scholarly journals Complete Genome Sequence of “Candidatus Portiera aleyrodidarum” BT-QVLC, an Obligate Symbiont That Supplies Amino Acids and Carotenoids to Bemisia tabaci

2012 ◽  
Vol 194 (23) ◽  
pp. 6654-6655 ◽  
Author(s):  
Diego Santos-Garcia ◽  
Pierre-Antoine Farnier ◽  
Francisco Beitia ◽  
Einat Zchori-Fein ◽  
Fabrice Vavre ◽  
...  
Keyword(s):  
Amino Acids ◽  
Bemisia Tabaci ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Mediterranean Species ◽  
Content Type ◽  
Reduced Genome ◽  
Obligate Symbiont

ABSTRACTThe genome of “CandidatusPortiera aleyrodidarum,” the primary endosymbiont of the whiteflyBemisia tabaci(Mediterranean species), is reported. It presents a reduced genome (357 kb) encoding the capability to synthetize, or participate in the synthesis of, several amino acids and carotenoids, being the first insect endosymbiont capable of supplying carotenoids.

scholarly journals Complete Genome Sequence of Salmonella enterica Siphophage Shemara

2020 ◽  
Vol 9 (6) ◽  
Author(s):  
Michael Chung ◽  
Yicheng Xie ◽  
Heather Newkirk ◽  
Mei Liu ◽  
Jason J. Gill ◽  
...  
Keyword(s):  
Amino Acid ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Salmonella Enterica ◽  
Complete Genome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Amino Acid Levels

Here, we present the annotated genome of Shemara, a siphophage of Salmonella enterica. The Shemara genome is 44 kb with 83 predicted protein-coding genes. At the nucleotide and amino acid levels, Shemara is most similar to phages in the Guernseyvirinae subfamily.

scholarly journals Complete Genome Sequence of a Dickeya fangzhongdai Type Strain Causing Bleeding Canker of Pear Tree Trunks

2018 ◽  
Vol 6 (20) ◽  
Author(s):  
Yuqiang Zhao ◽  
Yanli Tian ◽  
Xiang Li ◽  
Baishi Hu
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Pyrus Pyrifolia ◽  
Protein Coding ◽  
Content Type ◽  
Pear Tree ◽  
Genes Encoding ◽  
Pear Trees ◽  
Rna Genes

ABSTRACT Dickeya fangzhongdai DSM 101947T was isolated from pear trees (Pyrus pyrifolia) in Zhejiang Province, China, and is the causal agent of bleeding canker, a devastating disease of pear trees. Here, we provide the complete genome sequence of this bacterium, which has a 5,027,163-bp-long genome, including 4,375 protein-coding genes and 100 RNA genes. This strain possesses a number of genes encoding virulence factors of pathogens.

scholarly journals Illumina Sequencing Reveals the First Near-Complete Genome Sequence of Ugandan Passiflora Virus

2019 ◽  
Vol 8 (20) ◽  
Author(s):  
E. K. Mbeyagala ◽  
S. Maina ◽  
M. W. Macharia ◽  
S. B. Mukasa ◽  
T. Holton
Keyword(s):  
Amino Acid ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Amino Acid Identity ◽  
Passion Fruit ◽  
Passiflora Edulis ◽  
Content Type ◽  
Acid Identity ◽  
Symptomatic Sample

Here, we present the first near-complete genome of Ugandan Passiflora virus (UPV) sequenced from a symptomatic sample of KH7 passion fruit (Passiflora edulis Sims) variety. UPV had limited amino acid identity with other potyviruses known to cause passion fruit woodiness disease (PWD).

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