scholarly journals Draft Genome Sequence of Lactobacillus gorillae Strain KZ01 T , Isolated from a Western Lowland Gorilla

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Sayaka Tsuchida ◽  
Maiko Nezuo ◽  
Masatoshi Tsukahara ◽  
Yoshitoshi Ogura ◽  
Tetsuya Hayashi ◽  
...  
Keyword(s):  
Comparative Genomics ◽  
Genome Sequence ◽  
Nonhuman Primate ◽  
Draft Genome ◽  
Gorilla Gorilla ◽  
Draft Genome Sequence ◽  
Gorilla Gorilla Gorilla ◽  
Western Lowland Gorilla

Here, we report the draft genome sequence of Lactobacillus gorillae strain KZ01 T isolated from a western lowland gorilla ( Gorilla gorilla gorilla ). This genome sequence will be helpful for the comparative genomics between human and nonhuman primate-associated Lactobacillus .

scholarly journals Comparative Genomics Analysis of Two Different Virulent Bovine Pasteurella multocida Isolates

2016 ◽  
Vol 2016 ◽  
pp. 1-14 ◽  
Author(s):  
Huihui Du ◽  
Rendong Fang ◽  
Tingting Pan ◽  
Tian Li ◽  
Nengzhang Li ◽  
...  
Keyword(s):  
Comparative Genomics ◽  
Genome Sequence ◽  
Pasteurella Multocida ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Insertion Sequences ◽  
Capsular Type ◽  
Protein Coding ◽  
Protein Coding Genes ◽  
Comparative Genomics Analysis

The Pasteurella multocida capsular type A isolates can cause pneumonia and bovine respiratory disease (BRD). In this study, comparative genomics analysis was carried out to identify the virulence genes in two different virulent P. multocida capsular type A isolates (high virulent PmCQ2 and low virulent PmCQ6). The draft genome sequence of PmCQ2 is 2.32 Mbp and contains 2,002 protein-coding genes, 9 insertion sequence (IS) elements, and 1 prophage region. The draft genome sequence of PmCQ6 is 2.29 Mbp and contains 1,970 protein-coding genes, 2 IS elements, and 3 prophage regions. The genome alignment analysis revealed that the genome similarity between PmCQ2 and PmCQ6 is 99% with high colinearity. To identify the candidate genes responsible for virulence, the PmCQ2 and PmCQ6 were compared together with that of the published genomes of high virulent Pm36950 and PmHN06 and avirulent Pm3480 and Pm70 (capsular type F). Five genes and two insertion sequences are identified in high virulent strains but not in low virulent or avirulent strains. These results indicated that these genes or insertion sequences might be responsible for the virulence of P. multocida, providing prospective candidates for further studies on the pathogenesis and the host-pathogen interactions of P. multocida.

scholarly journals Improved De Novo Draft Genome Sequence of the Nocavionin-Producing Type Strain Nocardia terpenica IFM 0706 and Comparative Genomics with the Closely Related Strain Nocardia terpenica IFM 0406

2020 ◽  
Vol 9 (34) ◽  
Author(s):  
Anina Buchmann ◽  
Harald Gross
Keyword(s):  
Comparative Genomics ◽  
Genome Size ◽  
Genome Sequence ◽  
Type Strain ◽  
De Novo ◽  
Draft Genome ◽  
Pathogenic Strain ◽  
Draft Genome Sequence ◽  
Related Strain ◽  
Content Type

ABSTRACT We report an improved de novo draft genome sequence of the human-pathogenic strain Nocardia terpenica IFM 0706T. The resequencing unveiled that the genome size is larger than anticipated, reducing significantly the number of contigs and building a basis for comparison with the closely related strain N. terpenica IFM 0406.

scholarly journals Draft Genome Sequence of Plasmodium gonderi, a Malaria Parasite of African Old World Monkeys

2017 ◽  
Vol 5 (28) ◽  
Author(s):  
Hajime Honma ◽  
Satoru Kawai ◽  
Daisuke Motooka ◽  
Shota Nakamura ◽  
Takahiro Tougan ◽  
...  
Keyword(s):  
Comparative Genomics ◽  
Genome Sequence ◽  
Malaria Parasite ◽  
Draft Genome ◽  
Natural Host ◽  
Draft Genome Sequence ◽  
Old World Monkeys ◽  
Malaria Parasites ◽  
Old World

ABSTRACT Plasmodium gonderi is a primate parasite whose natural host is the African Old World monkeys. Here, we report the draft genome sequence for P. gonderi. The data are useful not only for understanding the evolution of malaria but also for allowing the comparative genomics of malaria parasites.

scholarly journals Draft Genome Sequence of Flavobacterium sp. Strain TAB 87, Able To Inhibit the Growth of Cystic Fibrosis Bacterial Pathogens Belonging to the Burkholderia cepacia Complex

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Luana Presta ◽  
Ilaria Inzucchi ◽  
Emanuele Bosi ◽  
Marco Fondi ◽  
Elena Perrin ◽  
...  
Keyword(s):  
Cystic Fibrosis ◽  
Antibiotic Resistance ◽  
Comparative Genomics ◽  
Bioactive Compounds ◽  
Genome Sequence ◽  
Burkholderia Cepacia ◽  
Draft Genome ◽  
Burkholderia Cepacia Complex ◽  
Draft Genome Sequence ◽  
Antarctic Seawater

We report here the draft genome sequence of the Flavobacterium sp. TAB 87 strain, isolated from Antarctic seawater during a summer campaign near the French Antarctic station Dumont d’Urville (60°40′S, 40°01′E). It will allow for comparative genomics and the fulfillment of both fundamental and application-oriented investigations. It allowed the recognition of genes associated with the production of bioactive compounds and antibiotic resistance.

scholarly journals Genome resource for peanut web blotch causal agent Peyronellaea arachidicola strain YY187

Plant Disease ◽  
2020 ◽  
Author(s):  
Shaojian Li ◽  
Xia Xue ◽  
Meng Gao ◽  
Na Wang ◽  
Xiaowei Cui ◽  
...  
Keyword(s):  
Comparative Genomics ◽  
Genome Size ◽  
Arachis Hypogaea ◽  
Genome Sequence ◽  
Draft Genome ◽  
Causal Agent ◽  
Draft Genome Sequence ◽  
Arachis Hypogaea L ◽  
Symptomatic Leaf

Peyronella arachidicola is the causal agent of peanut (Arachis hypogaea L.) web blotch. Here, we report an assembled draft genome sequence of P. arachidicola strain YY187 obtained from the symptomatic leaf of peanut in China. The genome size is 47.3Mb, consisting of 26 contigs (N50=2.2Mb) with the G+C content of 56.37%. This genome will provide a valuable foundation for further research on genetics and comparative genomics of P. arachidicola.

scholarly journals Draft Genome Sequences of the Antimicrobial Producers Pseudomonas sp. TAA207 and Pseudomonas sp. TAD18 Isolated from Antarctic Sediments

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Luana Presta ◽  
Ilaria Inzucchi ◽  
Emanuele Bosi ◽  
Marco Fondi ◽  
Elena Perrin ◽  
...  
Keyword(s):  
Antibiotic Resistance ◽  
Comparative Genomics ◽  
Bioactive Compounds ◽  
Genome Sequence ◽  
Draft Genome ◽  
Coastal Areas ◽  
Draft Genome Sequence ◽  
Pseudomonas Sp ◽  
Genome Sequences ◽  
Terra Nova Bay

We report here the draft genome sequence of the Pseudomonas sp. TAA207 and Pseudomonas sp. TAD18 strains, isolated from Antarctic sediments during a summer campaign near coastal areas of Terra Nova Bay (Antarctica). Genome sequence knowledge allowed the identification of genes associated with the production of bioactive compounds and antibiotic resistance. Furthermore, it will be instrumental for comparative genomics and the fulfillment of both basic and application-oriented investigations.

scholarly journals Draft Genome Sequence of Lactobacillus curvatus FLEC03, a Meat-Borne Isolate from Beef Carpaccio Packaged in a Modified Atmosphere

2017 ◽  
Vol 5 (26) ◽  
Author(s):  
Lucrecia C. Terán ◽  
Gwendoline Coeuret ◽  
Raúl Raya ◽  
Marie-Christine Champomier-Vergès ◽  
Stéphane Chaillou
Keyword(s):  
Comparative Genomics ◽  
Genome Sequence ◽  
Draft Genome ◽  
Food Products ◽  
Draft Genome Sequence ◽  
Modified Atmosphere ◽  
Lactobacillus Curvatus ◽  
Content Type

ABSTRACT In this study, we present the draft genome sequence for Lactobacillus curvatus FLEC03. This strain was isolated from beef carpaccio packaged in a modified atmosphere. The draft genome will contribute to understanding the role of L. curvatus strains in food products (fermentation, biopreservation, or spoilage) through comparative genomics with other strains.

scholarly journals Draft Genome Sequence of Pseudomonas sp. EpS/L25, Isolated from the Medicinal Plant Echinacea purpurea and Able To Synthesize Antimicrobial Compounds

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Luana Presta ◽  
Emanuele Bosi ◽  
Marco Fondi ◽  
Isabel Maida ◽  
Elena Perrin ◽  
...  
Keyword(s):  
Antibiotic Resistance ◽  
Comparative Genomics ◽  
Medicinal Plant ◽  
Bioactive Compounds ◽  
Genome Sequence ◽  
Draft Genome ◽  
Echinacea Purpurea ◽  
Draft Genome Sequence ◽  
Antimicrobial Compounds ◽  
Pseudomonas Sp

We announce here the draft genome sequence of Pseudomonas sp. strain EpS/L25, isolated from the stem/leaves of the medicinal plant Echinacea purpurea . This genome will allow for comparative genomics in order to identify genes associated with the production of bioactive compounds and antibiotic resistance.

scholarly journals Draft Genome Sequences of Two Salmonella enterica Serotype Infantis Strains Isolated from a Captive Western Lowland Gorilla ( Gorilla gorilla gorilla ) and a Cohabitant Black and White Tegu ( Tupinambis merianae ) in Brazil

2016 ◽  
Vol 4 (1) ◽  
Author(s):  
Tatiane A. Paixão ◽  
Fernanda M. Coura ◽  
Marcelo C. C. Malta ◽  
Herlandes P. Tinoco ◽  
Angela T. Pessanha ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Salmonella Enterica ◽  
Draft Genome ◽  
Gorilla Gorilla ◽  
Whole Genome ◽  
Genome Sequences ◽  
Gorilla Gorilla Gorilla ◽  
Western Lowland Gorilla ◽  
Black And White ◽  
Tupinambis Merianae

The draft genome sequences of two Salmonella enterica serotype Infantis isolates are reported here. One of the strains was isolated from a western lowland gorilla ( Gorilla gorilla gorilla ) with colitis. The second strain was isolated from a reptile that inhabited the same premises. Whole-genome sequencing demonstrated that these isolates were not clonal.

scholarly journals Draft Genome Sequence of ‘Candidatus Phytoplasma pini’-Related Strain MDPP: A Resource for Comparative Genomics of Gymnosperm-Infecting Phytoplasmas

Plant Disease ◽  
2020 ◽  
Vol 104 (4) ◽  
pp. 1009-1010
Author(s):  
Weili Cai ◽  
Jonathan Shao ◽  
Yan Zhao ◽  
Robert E. Davis ◽  
Stefano Costanzo
Keyword(s):  
Comparative Genomics ◽  
North America ◽  
Genome Sequence ◽  
Reference Strain ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Related Strain ◽  
Broom Disease ◽  
Pinus Spp

‘Candidatus Phytoplasma pini’-related strain MDPP, the reference strain of subgroup 16SrXXI-B, is a pathogen associated with witches’ broom disease of Pinus spp. in North America. Here, we report the first draft genome sequence of ‘Ca. Phytoplasma pini’ strain MDPP, which consists of 474,136 bases, with a G + C content of 22.22%. This information will facilitate comparative genomics of gymnosperm-infecting phytoplasmas.

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