Genetic Differentiation of Chinese Isolates of Rickettsia sibirica by Partial ompA Gene Sequencing and Multispacer Typing

Abstract Background The pathogen genus Rickettsia contains the linages spotted fever group, typhus group, transitional group, and the ancestral group, of which the spotted fever group Rickettsia (SFGR) is transmitted by ticks. Dermacentor nuttalli is considered the main vector carrying SFGR. Studying the genetic diversity and population structure of Rickettsia is essential for developing effective control strategies and predicting evolutionary trends of the pathogens. Methods We collected 408 Dermacentor nuttalli in the Inner Mongolia Autonomous region in 2019, detected Rickettsia infection, and characterized the haplotypes. The extracted Rickettsia DNA of the gltA and ompA genes were amplified and sequenced. Result In this study, 10 haplotypes of the gltA gene and 22 haplotypes of the ompA gene were obtained. In the two resulting phylogenetic trees, the haplotypes G1-G7 and G9 of the gltA gene clustered with Rickettsia raoultii, while G8 and G10 clustered with Rickettsia sibirica. Haplotypes O1-O15, O18 and O20-O22 of the ompA gene clustered with Rickettsia raoultii, while O16 and O19 clustered with Rickettsia sibirica. The average haplotype diversity was 0.3 for gltA and 0.7 for ompA, while the average nucleotide diversity was greater than 0.05. Neutrality tests were insignificant for Tajima’s D results and Fu’s Fs results. The fixation index values (FST) showed that the degree of genetic differentiation between most sampled populations was small (FST<0.05), while others were medium (FST>0.05) and large (FST>0.15). Analysis of molecular variance (AMOVA) revealed that the variation within populations was greater than that between populations. The mismatch analysis of Rickettsia showed double peaks. Conclusion We found two genotypes of Rickettsia: Rickettsia raoultii and Rickettsia sibirica. The high genetic diversity of Rickettsia allows for easy adaption to different environments; furthermore, genetic differentiation between populations is small and Rickettsia populations do not show a pedigree geographical structure. The high rates of retention and infestation of Rickettsia in Dermacentor nuttalli together with the animal husbandry exchange in China gradually lead to the genetic characteristics of Rickettsia harmonizing across various regions. Overall, the significant genetic diversity and geographic structure of Rickettsia in Dermacentor nuttalli are critical for SFGR control.

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Revision of the stick insect genus Leptynia: description of new taxa, speciation mechanism and phylogeography

Contributions to Zoology ◽

10.1163/18759866-08101002 ◽

2012 ◽

Vol 81 (1) ◽

pp. 25-42 ◽

Cited By ~ 14

Author(s):

Valerio Scali ◽

Liliana Milani ◽

Marco Passamonti

Keyword(s):

Genetic Differentiation ◽

Sex Chromosome ◽

Karyotype Analysis ◽

Mitochondrial Gene ◽

Gene Sequencing ◽

Stick Insect ◽

Clear Cut ◽

Stick Insects ◽

Morphological Distinction ◽

A New Species

Leptynia specimens were analyzed by karyotype analysis, mitochondrial gene sequencing and SEM of bodies and eggs. Here we describe a new species, Leptynia annaepaulae, and three subspecies of L. attenuata Pantel (L. attenuata attenuata, L. attenuata iberica, L. attenuata algarvica). The phylogeny of the genus Leptynia is congruent with a karyotype trend toward a reduction of chromosome number and the shift from the shared XX/X0 sex chromosome formula to the unusual XX/XY one. Chromosome repatterning appears to occur ahead of genetic differentiation, following a chromosome model of cladogenesis. Chromosome and genetic differentiation, in turn, appears to precede morphological distinction, thus realizing a condition of incipient species for most of the Leptynia taxa. Actually, morphological analyses revealed that, only rarely clear cut differences exist among and between taxa, while, more often, just trends in the differentiating traits occur, since the investigated characters generally suffer from some overlapping: In this study, only the 10th:9th ratio value and the subanal vomer appear to be diagnostic for L. annaepaulae against all other Leptynia taxa. As a consequence, the subanal vomer as well as cercus tooth features with egg chorion traits are not sharply diagnostic for the remaining co-generic taxa; however, comparisons are quite helpful in reducing uncertainties. A likely phylogeographic scenario for the genus supports that Leptynia ancestors spread from Northern Africa into Southern Spain where an ancestral taxon originated L. annaepaulae (2n = 40/39, XX/X0, with 2 large dibrachial pairs). Later on, a northbound colonization, should have originated L. caprai (2n = 40/39, XX/X0, all acrocentrics), from which L. montana (2n = 38, XX/X0) and L. attenuata (2n = 36, XY/XX) originated; supporting instances of chromosome repatterning have been actually observed. In this connection we like to stress that, particularly in stick insects, androgenesis has been a preferential pathway to quickly make homozygous those odd chromosome rearrangements likely responsible for low fitness in the heterozygotes.

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Rickettsia sibirica mongolitimonae infection, Sri Lanka

The Journal of Infection in Developing Countries ◽

10.3855/jidc.8743 ◽

2017 ◽

Vol 11 (08) ◽

pp. 668-671

Author(s):

Charlotte Cordier ◽

Pierre Tattevin ◽

Caroline Leyer ◽

Marine Cailleaux ◽

Didier Raoult ◽

...

Keyword(s):

Sri Lanka ◽

Skin Biopsy ◽

Spotted Fever ◽

Pcr Amplification ◽

Rickettsia Conorii ◽

Spotted Fever Group ◽

Axillary Lymph ◽

Ompa Gene ◽

Rickettsia Felis ◽

Rickettsia Sibirica

Introduction. Rickettsia sibirica mongolitimonae was recently reported as a common rickettsiosis in France. Current serological evidence suggests the presence of scrub typhus and spotted fever group rickettsiosis in Sri Lanka. We detected a human case of R. sibirica mongolitimonae in Sri Lanka. Methodology. A skin biopsy of the eschar was tested for the presence of Rickettsia spp. using qPCR assay targeting a 109-bp fragment of a hypothetical protein and by PCR amplification and sequencing targeting the ompA gene. Results. A 30-year-old woman who had just returned from travel to a jungle in Sri Lanka was evaluated as an outpatient for fever. Examination revealed an enlarged axillary lymph node, a maculopapular rash and an eschar at her left flank and a skin biopsy of the eschar was performed. The skin biopsy was positive for the presence of Rickettsia spp. by qPCR and PCR amplification and sequencing targeting the ompA gene revealed R. sibirica mongolitimonae. Immunofluorescence assay on an acute serum sample for spotted fever group rickettsial antigens (Rickettsia conorii conorii, R. sibirica mongolitimonae, Rickettsia felis) and typhus group rickettsiae (Rickettsia typhi) was negative. The patient was treated by oral doxycycline (200 mg/day) for one week. Conclusions. R. sibirica mongolitimonae should be considered in the differential diagnosis of patients with suspected rickettsiosis in, or returning from, Sri Lanka.

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