scholarly journals Complete Genome Sequence of the Broad Host Range Single-Stranded RNA Phage PRR1 Places It in the Levivirus Genus with Characteristics Shared with Alloleviviruses

2006 ◽  
Vol 80 (18) ◽  
pp. 9326-9330 ◽  
Author(s):  
Tanja M. Ruokoranta ◽  
A. Marika Grahn ◽  
Janne J. Ravantti ◽  
Minna M. Poranen ◽  
Dennis H. Bamford
Keyword(s):  
Host Range ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Broad Host Range ◽  
Host Genus ◽  
Replicase Proteins ◽  
The Family ◽  
Single Host ◽  
Rna Phage

ABSTRACT Single-stranded RNA (ssRNA) bacteriophages of the family Leviviridae infect gram-negative bacteria. They are restricted to a single host genus. Phage PRR1 is an exception, having a broad host range due to the promiscuity of the receptor encoded by the IncP plasmid. Here we report the complete genome sequence of PRR1. Three proteins homologous with those of other ssRNA phages, i.e., maturation, coat, and replicase proteins, were identified. A fourth protein has a lysis function. Comparison of PRR1 with other members of the Leviviridae family places PRR1 in the genus Levivirus with some characteristics more similar to those of members of the genus Allolevivirus.

scholarly journals Complete Genome Sequence of the Broad-Host-Range Strain Sinorhizobium fredii USDA257

2012 ◽  
Vol 194 (16) ◽  
pp. 4483-4483 ◽  
Author(s):  
J. Schuldes ◽  
M. Rodriguez Orbegoso ◽  
C. Schmeisser ◽  
H. B. Krishnan ◽  
R. Daniel ◽  
...  
Keyword(s):  
Host Range ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Broad Host Range ◽  
Sinorhizobium Fredii

scholarly journals Complete Genome Sequence of the Broad-Host-Range Vibriophage KVP40: Comparative Genomics of a T4-Related Bacteriophage

2003 ◽  
Vol 185 (17) ◽  
pp. 5220-5233 ◽  
Author(s):  
Eric S. Miller ◽  
John F. Heidelberg ◽  
Jonathan A. Eisen ◽  
William C. Nelson ◽  
A. Scott Durkin ◽  
...  
Keyword(s):  
Host Range ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Gene Clusters ◽  
Open Reading Frames ◽  
Broad Host Range ◽  
Group I Introns ◽  
Repair Enzymes ◽  
Group I

ABSTRACT The complete genome sequence of the T4-like, broad-host-range vibriophage KVP40 has been determined. The genome sequence is 244,835 bp, with an overall G+C content of 42.6%. It encodes 386 putative protein-encoding open reading frames (CDSs), 30 tRNAs, 33 T4-like late promoters, and 57 potential rho-independent terminators. Overall, 92.1% of the KVP40 genome is coding, with an average CDS size of 587 bp. While 65% of the CDSs were unique to KVP40 and had no known function, the genome sequence and organization show specific regions of extensive conservation with phage T4. At least 99 KVP40 CDSs have homologs in the T4 genome (Blast alignments of 45 to 68% amino acid similarity). The shared CDSs represent 36% of all T4 CDSs but only 26% of those from KVP40. There is extensive representation of the DNA replication, recombination, and repair enzymes as well as the viral capsid and tail structural genes. KVP40 lacks several T4 enzymes involved in host DNA degradation, appears not to synthesize the modified cytosine (hydroxymethyl glucose) present in T-even phages, and lacks group I introns. KVP40 likely utilizes the T4-type sigma-55 late transcription apparatus, but features of early- or middle-mode transcription were not identified. There are 26 CDSs that have no viral homolog, and many did not necessarily originate from Vibrio spp., suggesting an even broader host range for KVP40. From these latter CDSs, an NAD salvage pathway was inferred that appears to be unique among bacteriophages. Features of the KVP40 genome that distinguish it from T4 are presented, as well as those, such as the replication and virion gene clusters, that are substantially conserved.

scholarly journals Complete Genome Sequence of the N2-Fixing Broad Host Range Endophyte Klebsiella pneumoniae 342 and Virulence Predictions Verified in Mice

PLoS Genetics ◽  
2008 ◽  
Vol 4 (7) ◽  
pp. e1000141 ◽  
Author(s):  
Derrick E. Fouts ◽  
Heather L. Tyler ◽  
Robert T. DeBoy ◽  
Sean Daugherty ◽  
Qinghu Ren ◽  
...  
Keyword(s):  
Klebsiella Pneumoniae ◽  
Host Range ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Broad Host Range

scholarly journals Complete genome sequence of a broad-host-range lytic Dickeya spp. bacteriophage ϕD5

2014 ◽  
Vol 159 (11) ◽  
pp. 3153-3155 ◽  
Author(s):  
Robert Czajkowski ◽  
Zofia Ozymko ◽  
Szymon Zwirowski ◽  
Ewa Lojkowska
Keyword(s):  
Host Range ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Broad Host Range

Complete genome sequence and characterization of a broad-host range T4-like bacteriophage phiAS5 infecting Aeromonas salmonicida subsp. salmonicida

2012 ◽  
Vol 157 (1-2) ◽  
pp. 164-171 ◽  
Author(s):  
Ji Hyung Kim ◽  
Jee Soo Son ◽  
Yun Jaie Choi ◽  
Casiano H. Choresca ◽  
Sang Phil Shin ◽  
...  
Keyword(s):  
Host Range ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Aeromonas Salmonicida ◽  
Broad Host Range

scholarly journals Complete Genome Sequence of Broad-Host-Range Shiga Toxin-Converting Bacteriophage SH2026Stx1, Isolated from Escherichia coli O157:H7

2018 ◽  
Vol 6 (25) ◽  
Author(s):  
Mingrui Duan ◽  
Samuel S. Hunter ◽  
Scott A. Minnich ◽  
Matthew W. Fagnan ◽  
Daniel D. New ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Host Range ◽  
Genome Sequence ◽  
Shiga Toxin ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Broad Host Range ◽  
Escherichia Coli O157 ◽  
Content Type ◽  
E Coli

ABSTRACT The Shiga toxin-encoding phage SH2026Stx1 was isolated from Escherichia coli O157:H7 strain 2026. SH2026Stx1 and its detoxified derivative can infect a broad range of E. coli strains, including commensal, enteropathogenic, and enteroaggregative strains. We report here the complete genome sequence of phage SH2026Stx1 and its important features.

scholarly journals Complete Genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species

2014 ◽  
Vol 9 (3) ◽  
pp. 763-774 ◽  
Author(s):  
Lionel Moulin ◽  
Agnieszka Klonowska ◽  
Bournaud Caroline ◽  
Kristina Booth ◽  
Jan A.C. Vriezen ◽  
...  
Keyword(s):  
Host Range ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Broad Host Range ◽  
Nitrogen Fixing

scholarly journals Genome Sequence of the K139-Like Phage VcP032 Originating from theVibrio choleraeO1 El Tor Ogawa Serotype

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Claudia Jäckel ◽  
Eckhard Strauch ◽  
Jens Andre Hammerl
Keyword(s):  
Host Range ◽  
Vibrio Cholerae ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Broad Host Range ◽  
High Poverty ◽  
Phenotypic Features ◽  
El Tor

Vibrio choleraeis the cause of large cholera outbreaks, especially in endemic regions with high poverty and inadequate sanitation. Here, we announce the complete genome sequence of the virulence-associated broad host rangeV. choleraephage VcP032, including a brief summary of its genotypic and phenotypic features.

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