scholarly journals Genome Sequences of Ambystoma Tigrinum Virus Recovered during a Mass Die-off of Western Tiger Salamanders in Alberta, Canada

2019 ◽  
Vol 8 (29) ◽  
Author(s):  
Oliver Lung ◽  
Michelle Nebroski ◽  
Shivani Gupta ◽  
Cameron Goater
Keyword(s):  
Amino Acids ◽  
High Mortality ◽  
Complete Genome ◽  
Open Reading Frames ◽  
Ambystoma Tigrinum ◽  
Genome Sequences ◽  
Ambystoma Tigrinum Virus ◽  
Content Type ◽  
Tiger Salamanders ◽  
Reading Frames

Complete genome sequences of six Ambystoma tigrinum viruses (ATV) were determined directly from tail clips of western tiger salamanders (Ambystoma mavortium) from 2013 (high-mortality year) and 2014 (low-mortality year) in Alberta, Canada. The genome lengths ranged from 106,258 to 106,915 bp and contained 108 open reading frames encoding predicted proteins larger than 50 amino acids.

scholarly journals Genome Sequences of Two Dual-Serotype-Specific Echovirus 20 Strains from Nigeria

2019 ◽  
Vol 8 (43) ◽  
Author(s):  
T. O. C. Faleye ◽  
O. M. Adewumi ◽  
D. Klapsa ◽  
M. Majumdar ◽  
J. Martin ◽  
...  
Keyword(s):  
Amino Acids ◽  
Complete Genome ◽  
Neutralization Assay ◽  
Open Reading Frames ◽  
Genome Sequences ◽  
Overlapping Open Reading Frames ◽  
Reading Frames

Here, we describe nearly complete genome sequences (7,361 nucleotides [nt] and 6,893 nt) of two echovirus 20 (E20) isolates from Nigeria that were simultaneously typed as CVB and E20 (dual serotype) by neutralization assay. Both include two overlapping open reading frames (ORFs) of 67 and 2,183 amino acids that encoded a recently described gut infection-facilitating protein and the classic enterovirus proteins, respectively.

scholarly journals Coding-Complete Genome Sequences of an Iteradensovirus and an Alphapermutotetra-Like Virus Identified from the Pine Processionary Moth (Thaumetopoea pityocampa) in Portugal

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Franck Dorkeld ◽  
Réjane Streiff ◽  
Carole Kerdelhué ◽  
Mylène Ogliastro
Keyword(s):  
Complete Genome ◽  
Open Reading Frames ◽  
Thaumetopoea Pityocampa ◽  
Data Sets ◽  
Genome Sequences ◽  
Virus Family ◽  
Content Type ◽  
Pine Processionary Moth ◽  
Transcriptomic Data ◽  
Reading Frames

ABSTRACT The coding-complete genome sequences of an iteradensovirus (family Parvoviridae) and an alphapermutotetra-like virus (family Permutotetraviridae) were discovered from transcriptomic data sets obtained from Thaumetopoea pityocampa larvae collected in Portugal. Each of the coding-complete genome sequences of these viruses contains three main open reading frames (ORFs).

scholarly journals Complete Genome Sequences of 10 Lactococcal Skunavirus Phages Isolated from Cheddar Cheese Whey Samples in Canada

2021 ◽  
Vol 10 (15) ◽  
Author(s):  
Laurie Doré ◽  
Gabrielle Pageau ◽  
Françoise Bourque-Leblanc ◽  
Marie-Ève Dupuis ◽  
Roxanne Lessard-Hurtubise ◽  
...  
Keyword(s):  
Complete Genome ◽  
Cheese Whey ◽  
Cheddar Cheese ◽  
Open Reading Frames ◽  
Genome Sequences ◽  
Content Type ◽  
Linear Genomes ◽  
Reading Frames ◽  
Cheese Production ◽  
Gc Contents

ABSTRACT We report the complete genome sequences of 10 virulent phages of the Skunavirus genus (Siphoviridae) that infect Lactococcus lactis strains used for cheddar cheese production in Canada. Their linear genomes range from 28,969 bp to 31,042 bp with GC contents of 34.1 to 35.1% and 55 to 60 predicted open reading frames (ORFs).

scholarly journals Complete Genome Sequences of Pseudomonas aeruginosa Phages vB_PaeP_PcyII-10_P3P1 and vB_PaeM_PcyII-10_PII10A

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Christine Pourcel ◽  
Cédric Midoux ◽  
Libera Latino ◽  
Marie-Agnès Petit ◽  
Gilles Vergnaud
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Complete Genome ◽  
Open Reading Frames ◽  
Genome Sequences ◽  
Reading Frames

vB_PaeP_PcyII-10_P3P1 and vB_PaeM_PcyII-10_PII10A are Pseudomonas aeruginosa bacteriophages belonging, respectively, to the Lit1virus genus of the Podoviridae family and the Pbunavirus genus of the Myoviridae family. Their genomes are 72,778 bp and 65,712 bp long, containing 94 and 93 predicted open reading frames, respectively.

scholarly journals Genome Sequences of Bacteriophages KaiHaiDragon and OneinaGillian, Isolated from Microbacterium foliorum in Riverside, California

2019 ◽  
Vol 8 (15) ◽  
Author(s):  
Gillian Miller ◽  
Steven Tran ◽  
Rhiannon Abrahams ◽  
Daniel Bazan ◽  
Ethan Blaylock ◽  
...  
Keyword(s):  
Soil Samples ◽  
Open Reading Frames ◽  
Genome Sequences ◽  
Bacterial Host ◽  
Content Type ◽  
Reading Frames

KaiHaiDragon and OneinaGillian are two bacteriophages which have been recovered from soil samples using the bacterial host Microbacterium foliorum. Their genome lengths are 52,992 bp and 61,703 bp, with 91 and 104 predicted open reading frames, respectively.

scholarly journals Complete Genome Sequences of Seven New Chrysodeixis includens Nucleopolyhedrovirus Isolates from Minas Gerais and Mato Grosso States in Brazil

2020 ◽  
Vol 9 (8) ◽  
Author(s):  
Saluana R. Craveiro ◽  
Peter W. Inglis ◽  
Laura Lisieux S. Monteiro ◽  
Luis Arthur V. M. Santos ◽  
Roberto C. Togawa ◽  
...  
Keyword(s):  
Open Reading Frames ◽  
Southeastern Brazil ◽  
Genome Sequences ◽  
Mato Grosso ◽  
Content Type ◽  
Soybean Looper ◽  
Reading Frames ◽  
Viral Isolates ◽  
Chrysodeixis Includens ◽  
Complete Genomic

We report the complete genomic sequences of seven viral isolates from the soybean looper (Chrysodeixis includens) from midwestern and southeastern Brazil. The genomes range from 138,760 to 139,637 bp in length with a G+C content of 39.2% and 140 open reading frames (ORFs).

scholarly journals Complete Genome Sequence of a Novel Satellite Virus Associated with Cassava Plants

2017 ◽  
Vol 5 (16) ◽  
Author(s):  
Adriana N. Souza ◽  
Fábio N. Silva ◽  
Claudine M. Carvalho
Keyword(s):  
Amino Acids ◽  
Coat Protein ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Open Reading Frames ◽  
Putative Protein ◽  
Satellite Virus ◽  
Cassava Plant ◽  
Reading Frames

ABSTRACT A novel satellite virus of 1,228 bp in length was found in a single cassava plant. Bioinformatic analyses show that it has two open reading frames (ORFs) in its genome, probably encoding a coat protein of 156 and a putative protein of 90 amino acids.

scholarly journals Complete Genome Sequence of a Bacteroides fragilis Bacteriophage, vB_BfrS_NCTC

2021 ◽  
Vol 10 (29) ◽  
Author(s):  
Mohammad A. Tariq ◽  
Simon R. Carding
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Bacteroides Fragilis ◽  
Opportunistic Pathogen ◽  
Open Reading Frames ◽  
Obligate Anaerobe ◽  
Commensal Bacterium ◽  
Content Type ◽  
Reading Frames

Bacteroides fragilis is an obligate anaerobe and a common gut commensal bacterium that is also an important opportunistic pathogen. Here, we present the complete genome sequence of the circularly permuted B. fragilis bacteriophage vB_BfrS_NCTC. It comprises 47,160 bp, with 69 open reading frames.

scholarly journals Complete Genome Sequence of a Rhabdovirus Strain from Culex Mosquitos Collected in Southern Switzerland

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Jakub Kubacki ◽  
Isabelle Hardmeier ◽  
Weihong Qi ◽  
Eleonora Flacio ◽  
Mauro Tonolla ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Culex Pipiens ◽  
Full Length ◽  
Open Reading Frames ◽  
Content Type ◽  
Full Length Genome ◽  
Reading Frames

ABSTRACT We report here the full-length genome sequence of a rhabdovirus strain detected in a pool of 21 Culex pipiens and Culex torrentium mosquitos collected in southern Switzerland. The genome has a length of 11,914 nucleotides and encodes five major putative open reading frames.

scholarly journals Complete Genome Sequence of XaF13, a Novel Bacteriophage of Xanthomonas vesicatoria from Mexico

2020 ◽  
Vol 9 (5) ◽  
Author(s):  
Guillermo Alejandro Solís-Sánchez ◽  
Evangelina Esmeralda Quiñones-Aguilar ◽  
Saul Fraire-Velázquez ◽  
Julio Vega-Arreguín ◽  
Gabriel Rincón-Enríquez
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Open Reading Frames ◽  
Phytopathogenic Bacterium ◽  
Content Type ◽  
Bacterial Spot Disease ◽  
Solanaceae Family ◽  
Reading Frames ◽  
Xanthomonas Vesicatoria

The phytopathogenic bacterium Xanthomonas vesicatoria is the causative agent of bacterial spot disease in various Solanaceae family members. Here, we describe the complete genome sequence of XaF13, a novel filamentous phage that infects the phytopathogenic bacterium X. vesicatoria. The 7,045-bp genome is predicted to encode 14 open reading frames, 7 of which are related to those of other filamentous Xanthomonas phages.

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