scholarly journals Draft Genome Sequences of Five Staphylococcus saprophyticus Strains Isolated from African Fermented Nono in Nigeria

2021 ◽  
Vol 10 (20) ◽  
Author(s):  
Etinosa O. Igbinosa ◽  
Erik Brinks ◽  
Abeni Beshiru ◽  
Isoken H. Igbinosa ◽  
Maria Stein ◽  
...  
Keyword(s):  
Draft Genome ◽  
Illumina Miseq ◽  
Fermented Milk ◽  
Milk Product ◽  
Protein Coding ◽  
Content Type ◽  
Staphylococcus Saprophyticus ◽  
Miseq Platform ◽  
Fermented Milk Product ◽  
Gc Contents

ABSTRACT Five Staphylococcus saprophyticus strains were isolated from the fermented milk product nono in Nigeria and were sequenced using an Illumina MiSeq platform. The genome sizes ranged from 2.53 to 2.60 Mbp, while the GC contents ranged from 32.99 to 33.07 mol%. The genomes possessed 2,505 to 2,687 protein-coding sequences.

scholarly journals Genome Sequence of Lacticaseibacillus rhamnosus Strain NCDC610, Isolated from a Traditional Cereal-Based Fermented Milk Product (Raabadi)

2021 ◽  
Vol 10 (45) ◽  
Author(s):  
Syed Azmal Ali ◽  
Ashish Kumar Singh ◽  
Sudhir K. Tomar ◽  
Pradip Behare
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Fermented Milk ◽  
Draft Genome Sequence ◽  
Milk Product ◽  
Content Type ◽  
Fermented Milk Product

We announce the draft genome sequence of Lacticaseibacillus rhamnosus NCDC610, an isolate from an Indian traditional cereal-based fermented milk product (Raabadi). The genome size of Lacticaseibacillus rhamnosus NCDC610 is 2.91 Mb with the assembled sequence, and the genome consists of 67 contigs.

scholarly journals Draft Genome Sequence of Ligilactobacillus salivarius TUCO-L2, Isolated from Lama glama Milk

2020 ◽  
Vol 9 (32) ◽  
Author(s):  
Leonardo Albarracin ◽  
Sandra Quilodrán-Vega ◽  
Kohtaro Fukuyama ◽  
Mikado Tomokiyo ◽  
M. Aminul Islam ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
Illumina Miseq ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Content Type ◽  
A Genome ◽  
Miseq Platform ◽  
Lama Glama

ABSTRACT Ligilactobacillus salivarius TUCO-L2 was isolated from llama milk in Bio-Bio, Chile, and sequenced with the Illumina MiSeq platform. TUCO-L2 genome sequencing revealed a genome size of 1,600,747 bp with 1,691 protein-coding genes and a GC content of 33%. This draft genome sequence will contribute to a better understanding of the microbiome of llama milk.

scholarly journals Draft Genome Sequence of Enterococcus mundtii QAUEM2808, Isolated from Dahi, a Fermented Milk Product

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
N. Farah ◽  
A. Mehdi ◽  
S. I. Soomro ◽  
N. I. Soomro ◽  
R. Tareb ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Fermented Milk ◽  
Draft Genome Sequence ◽  
Milk Product ◽  
Enterococcus Mundtii ◽  
Fermented Milk Product

Enterococcus mundtii QAUEM2808 has been isolated from dahi, an indigenous fermented milk product of Pakistan. Here, we report the draft genome sequence for this strain, which consists of 160 contigs corresponding to 2,957,514 bp and a G+C content of 38.5%.

scholarly journals Draft Genome Sequence of Bacillus subtilis subsp. subtilis MD 32, Isolated from the Korean Fermented Food Kimchi

2021 ◽  
Vol 10 (3) ◽  
Author(s):  
Ji-Young Lee ◽  
Gyu-Sung Cho ◽  
Charles M. A. P. Franz ◽  
Dae-Ook Kang
Keyword(s):  
Bacillus Subtilis ◽  
Draft Genome ◽  
Noncoding Rnas ◽  
Gc Content ◽  
Illumina Miseq ◽  
Fermented Food ◽  
Content Type ◽  
Illumina Miseq Platform ◽  
Miseq Platform ◽  
Subtilis Subsp

ABSTRACT Bacillus subtilis subsp. subtilis MD 32 was isolated from kimchi. The strain was sequenced using an Illumina MiSeq platform, and the genome size was 4,238,856 bp with a GC content of 43.41 mol%. The genome encoded 4,396 proteins, with 45 tRNAs, 6 rRNAs, and 5 noncoding RNAs.

scholarly journals Draft Genome Sequence of Lactobacillus plantarum BFE 5092 Isolated from Maasai Fermented Milk

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Folarin A. Oguntoyinbo ◽  
Gyu-Sung Cho ◽  
Erik Brinks ◽  
Gregor Fiedler ◽  
Jan Kabisch ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Genome Size ◽  
Lactobacillus Plantarum ◽  
Genome Sequence ◽  
Draft Genome ◽  
Fermented Milk ◽  
Milk Product ◽  
Protein Encoding ◽  
Encoding Genes ◽  
Fermented Milk Product

The draft genome of Lactobacillus plantarum BFE 5092 isolated from the Maasai traditional fermented milk product kule naoto was sequenced, and sequence analysis showed the assembled genome size to be 3,285,094 bp, containing a predicted total of 3,111 protein-encoding genes, 17 rRNAs, and 70 tRNAs.

scholarly journals Draft Genome Sequences of Five Paenibacillus Species of Dairy Origin

2020 ◽  
Vol 9 (37) ◽  
Author(s):  
Atinuke M. Olajide ◽  
Shu Chen ◽  
Gisèle LaPointe
Keyword(s):  
Dairy Products ◽  
Draft Genome ◽  
Dairy Industry ◽  
Illumina Miseq ◽  
Genome Sequences ◽  
Illumina Miseq Platform ◽  
Miseq Platform ◽  
Paenibacillus Species ◽  
Gc Contents

ABSTRACT Paenibacillus species are important spoilage organisms in the dairy industry. The genomes of five Paenibacillus species which were isolated from dairy products in Canada were sequenced using the Illumina MiSeq platform. Draft genomes ranging from 5.1 to 7.1 Mb with GC contents of 49 to 53% were generated.

scholarly journals Draft Genome Sequences of Two Lactobacillus casei Strains Isolated from Cheddar Cheese and a Fermented Milk Drink

2017 ◽  
Vol 5 (44) ◽  
Author(s):  
Akhikun Nahar ◽  
Anthony L. Baker ◽  
John P. Bowman ◽  
Margaret L. Britz
Keyword(s):  
Lactobacillus Casei ◽  
Draft Genome ◽  
Cheddar Cheese ◽  
Fermented Milk ◽  
Shotgun Sequencing ◽  
Sequencing Technology ◽  
Genome Sequences ◽  
Content Type ◽  
Gc Contents

ABSTRACT MiSeq Illumina shotgun sequencing technology was used to sequence two Lactobacillus casei strains, designated strains GCRL 163 and MJA 12. The estimated genome sizes for GCRL 163 and MJA 12 were 2.9 Mb and 3.1 Mb, with 46.35% and 46.31% GC contents, respectively.

scholarly journals Draft Genome Sequences of Two Novel Salmonella enterica subsp. enterica Strains Isolated from Low-Moisture Foods with Applications in Food Safety Research

2018 ◽  
Vol 6 (13) ◽  
Author(s):  
Devon R. Radford ◽  
Carlos G. Leon-Velarde ◽  
Shu Chen ◽  
Amir M. Hamidi Oskouei ◽  
Sampathkumar Balamurugan
Keyword(s):  
Salmonella Enterica ◽  
De Novo ◽  
Draft Genome ◽  
Illumina Miseq ◽  
Consensus Method ◽  
Genome Sequences ◽  
Content Type ◽  
Illumina Miseq Platform ◽  
Safety Research ◽  
Miseq Platform

ABSTRACT The genomes of two strains of Salmonella enterica subsp. enterica serovar Cubana and serovar Muenchen, isolated from dry hazelnuts and chia seeds, respectively, were sequenced using the Illumina MiSeq platform, assembled de novo using the overlap-layout-consensus method, and aligned to their respective most identical sequence genome scaffolds using MUMMER and BLAST searches.

scholarly journals Genome Sequence of Listeria innocua Strain MEZLIS26, Isolated from a Goat in South Africa

2019 ◽  
Vol 8 (44) ◽  
Author(s):  
Mohamed E. El Zowalaty ◽  
Rachel A. Hickman ◽  
Alexandra Moura ◽  
Marc Lecuit ◽  
Oliver T. Zishiri ◽  
...  
Keyword(s):  
South Africa ◽  
Genome Sequence ◽  
Dna Sequences ◽  
Draft Genome ◽  
Illumina Miseq ◽  
Listeria Innocua ◽  
Eastern Cape ◽  
Content Type ◽  
Transfer Rnas ◽  
Miseq Platform

Here, we report the draft genome sequence of Listeria innocua strain MEZLIS26, isolated from a healthy goat in Flagstaff, Eastern Cape Province, South Africa. The genome was sequenced using the Illumina MiSeq platform and had a length of 2,800,777 bp, with a G+C content of 37.4%, 2,755 coding DNA sequences (CDSs), 49 transfer RNAs (tRNAs), and 4 noncoding RNAs (ncRNAs).

scholarly journals Draft Genome Sequence of Lactobacillus reuteri Strain LR CGMCC 11154, Isolated from the Feces of Healthy Weaned Piglets

2019 ◽  
Vol 8 (3) ◽  
Author(s):  
Ting Yu ◽  
Xi Yang ◽  
Zhilin Wang ◽  
Cui Zhu ◽  
Jinlong Bei ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Lactobacillus Reuteri ◽  
Draft Genome ◽  
Illumina Miseq ◽  
Probiotic Bacterium ◽  
Whole Genome ◽  
Weaned Piglets ◽  
Content Type ◽  
Illumina Miseq Platform ◽  
Miseq Platform

Lactobacillus reuteri strain LR CGMCC 11154, which was isolated from the feces of healthy weaned piglets, was experimentally proven to be a probiotic bacterium. The whole genome was sequenced on the Illumina Miseq platform to obtain the draft genome, which consists of 120 contigs totaling 1.9 Mbp encoding 1,854 genes.

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