scholarly journals Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere

2020 ◽  
Vol 9 (27) ◽  
Author(s):  
Mircea Podar ◽  
Joel Turner ◽  
Leah H. Burdick ◽  
Dale A. Pelletier
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Populus Deltoides ◽  
Soil Bacterium ◽  
The Novel ◽  
Content Type ◽  
Eastern Cottonwood ◽  
Long Reads

ABSTRACT Roseimicrobium sp. strain ORNL1 is a soil bacterium that belongs to the phylum Verrucomicrobia and was isolated from the rhizosphere of a forest Eastern cottonwood tree, Populus deltoides, in Tennessee. Its 7.9-Mb chromosome was completely sequenced using PacBio long reads and is predicted to encode 6,288 proteins and 76 RNAs.

scholarly journals Complete Genome Sequence of Terriglobus albidus Strain ORNL, an Acidobacterium Isolated from the Populus deltoides Rhizosphere

2019 ◽  
Vol 8 (46) ◽  
Author(s):  
Mircea Podar ◽  
Joel Turner ◽  
Leah H. Burdick ◽  
Dale A. Pelletier
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Populus Deltoides ◽  
Content Type ◽  
Eastern Cottonwood ◽  
Long Reads

Terriglobus albidus strain ORNL is a heterotrophic soil acidobacterium isolated from the rhizosphere of an Eastern cottonwood tree (Populus deltoides) in Tennessee. Its 6.4-Mb chromosome was completely sequenced using PacBio long reads, and it encodes 5,010 proteins and 53 RNAs.

scholarly journals Complete Genome Sequence of Acinetobacter indicus Type Strain SGAir0564 Isolated from Tropical Air Collected in Singapore

2018 ◽  
Vol 6 (18) ◽  
pp. e00230-18 ◽  
Author(s):  
Vineeth Kodengil Vettath ◽  
Ana Carolina M. Junqueira ◽  
Akira Uchida ◽  
Rikky W. Purbojati ◽  
James N. I. Houghton ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Strain ◽  
Protein Coding ◽  
Content Type ◽  
Air Samples ◽  
Protein Coding Genes ◽  
Long Reads

ABSTRACT Acinetobacter indicus (Gammaproteobacteria) is a strict aerobic nonmotile bacterium. The strain SGAir0564 was isolated from air samples collected in Singapore. The complete genome is 3.1 Mb and was assembled using a combination of short and long reads. The genome contains 2,808 protein-coding genes, 80 tRNAs, and 21 rRNA subunits.

scholarly journals Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides

2020 ◽  
Vol 9 (27) ◽  
Author(s):  
Mircea Podar ◽  
Joel Turner ◽  
Leah H. Burdick ◽  
Dale A. Pelletier
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Populus Deltoides ◽  
Sulfur Cycling ◽  
Nutrient Cycles ◽  
Eastern Cottonwood ◽  
Wide Range ◽  
Ecological Roles

ABSTRACT Starkeya sp. strain ORNL1 is an alphaproteobacterium isolated from the rhizosphere of an Eastern cottonwood tree. Starkeya spp. are physiologically versatile, using a wide range of nutritional and energetic resources and serving important ecological roles in carbon and sulfur cycling. The 6.3-Mb chromosome of Starkeya sp. strain ORNL1 was completely sequenced and will help in understanding nutrient cycles.

scholarly journals Complete Genome Sequence of Bacillus cereus Strain PL1, Isolated from Soil in Japan

2020 ◽  
Vol 9 (12) ◽  
Author(s):  
Kentaro Miyazaki ◽  
Erina Hase ◽  
Tomomasa Maruya
Keyword(s):  
Bacillus Cereus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Soil Bacterium ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Content Type ◽  
Bacterium Strain

We isolated the soil bacterium strain PL1 and herein report its complete genome sequence. The strain presented 97% average nucleotide identity (ANI) to Bacillus cereus and 91% ANIs to other members of the B. cereus group, indicating that it is affiliated with B. cereus.

scholarly journals Complete Genome Sequence of Sphingobium barthaii KK22, a High-Molecular-Weight Polycyclic Aromatic Hydrocarbon-Degrading Soil Bacterium

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Jiro F. Mori ◽  
Robert A. Kanaly
Keyword(s):  
Molecular Weight ◽  
Polycyclic Aromatic Hydrocarbon ◽  
Aromatic Hydrocarbon ◽  
High Molecular Weight ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Soil Bacterium ◽  
Content Type ◽  
Polycyclic Aromatic

ABSTRACT Sphingobium barthaii KK22T is a high-molecular-weight polycyclic aromatic hydrocarbon-degrading soil bacterium that has been investigated in biotransformation, microbial ecology, and DNA damage studies. The complete genome sequence of S. barthaii revealed four closed circular sequences, including two chromosomes, a megaplasmid, and a smaller plasmid, by hybrid assembly using short- and long-read sequencing technologies.

scholarly journals Complete Genome Sequence of Cupriavidus necator KK10, an Azaarene-Degrading and Polyhydroxyalkanoate-Producing Soil Bacterium

2021 ◽  
Vol 10 (28) ◽  
Author(s):  
Jiro F. Mori ◽  
Miho Nagai ◽  
Robert A. Kanaly
Keyword(s):  
Genome Sequence ◽  
Diesel Fuel ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Cupriavidus Necator ◽  
Soil Bacterium ◽  
Functional Genes ◽  
Content Type

Cupriavidus necator KK10 has been investigated in azaarene and diesel fuel biodegradation studies and is capable of polyhydroxyalkanoate production. Its complete genome sequence revealed two closed circular sequences, the chromosome (6.68 Mb) and plasmid (1.67 Mb). The KK10 genome carries functional genes potentially responsible for azaarene biodegradation and polyhydroxyalkanoate (PHA) biosynthesis.

scholarly journals Complete Genome Sequence of the Novel Klebsiella pneumoniae Phage Marfa

2019 ◽  
Vol 8 (29) ◽  
Author(s):  
Laith Harb ◽  
Justin Boeckman ◽  
Heather Newkirk ◽  
Mei Liu ◽  
Jason J. Gill ◽  
...  
Keyword(s):  
Klebsiella Pneumoniae ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
The Novel ◽  
Content Type ◽  
Phage T4 ◽  
Gene Functions

Here, we describe the complete genome sequence of the T4-like Klebsiella pneumoniae myophage Marfa. In its 168,532-bp genome, Marfa has 289 genes, for which 122 gene functions were predicted. Many similar proteins are shared between Marfa and phage T4, as well as its closest phage relatives.

scholarly journals Complete Genome Sequence of Vibrio rotiferianus Strain AM7

2020 ◽  
Vol 9 (21) ◽  
Author(s):  
Kentaro Miyazaki ◽  
Apirak Wiseschart ◽  
Kusol Pootanakit ◽  
Kei Kitahara
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
The Novel ◽  
Sequencing Data ◽  
Short Read ◽  
Content Type ◽  
Short Read Sequencing ◽  
Oxford Nanopore ◽  
Long Read

ABSTRACT We isolated the novel strain Vibrio rotiferianus AM7 from the shell of an abalone. In this article, we report the complete genome sequence of this organism, which was obtained by combining Oxford Nanopore long-read and Illumina short-read sequencing data.

scholarly journals Complete Genome Sequence of Lelliottia nimipressuralis Type Strain SGAir0187, Isolated from Tropical Air Collected in Singapore

2018 ◽  
Vol 6 (18) ◽  
Author(s):  
Cassie E. Heinle ◽  
Ana Carolina M. Junqueira ◽  
Akira Uchida ◽  
Rikky W. Purbojati ◽  
James N. I. Houghton ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Strain ◽  
Illumina Miseq ◽  
Protein Coding ◽  
Content Type ◽  
Air Samples ◽  
Protein Coding Genes ◽  
Long Reads

ABSTRACT Lelliottia nimipressuralis type strain SGAir0187 was isolated from tropical air samples collected in Singapore. The genome was assembled with an average coverage of 180-fold using Pacific Biosciences long reads and Illumina MiSeq paired-end reads. The genome measures 4.8 Mb and contains 4,424 protein-coding genes, 83 tRNAs, and 25 rRNAs.

scholarly journals Complete Genome Sequence of Peptacetobacter (Clostridium) hiranonis Strain DGF055142, Isolated from Dog Feces from Flagstaff, Arizona, USA, 2019

2021 ◽  
Vol 10 (9) ◽  
Author(s):  
Nathan E. Stone ◽  
Amalee E. Nunnally ◽  
Chandler C. Roe ◽  
Heidie M. Hornstra ◽  
David M. Wagner ◽  
...  
Keyword(s):  
Clostridium Difficile ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Illumina Miseq ◽  
Single Chromosome ◽  
Content Type ◽  
Long Reads ◽  
Oxford Nanopore ◽  
Infection Resistance

ABSTRACT A single-chromosome closed genome of Peptacetobacter (Clostridium) hiranonis strain DGF055142 was generated using Illumina MiSeq short reads paired with Oxford Nanopore MinION long reads. This isolate was obtained from a canine in Flagstaff, Arizona, in 2019. Peptacetobacter (C.) hiranonis was hypothesized to contribute to canine Clostridium difficile infection resistance.

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