scholarly journals Complete Genome Sequence of Bacillus cereus Strain PL1, Isolated from Soil in Japan

2020 ◽  
Vol 9 (12) ◽  
Author(s):  
Kentaro Miyazaki ◽  
Erina Hase ◽  
Tomomasa Maruya
Keyword(s):  
Bacillus Cereus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Soil Bacterium ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Content Type ◽  
Bacterium Strain

We isolated the soil bacterium strain PL1 and herein report its complete genome sequence. The strain presented 97% average nucleotide identity (ANI) to Bacillus cereus and 91% ANIs to other members of the B. cereus group, indicating that it is affiliated with B. cereus.

scholarly journals Complete Genome Sequence of Buttiauxella agrestis DSM 9389

2021 ◽  
Vol 10 (19) ◽  
Author(s):  
Nao Nakamichi ◽  
Ryota Moriuchi ◽  
Hideo Dohra ◽  
Hiroyuki Futamata ◽  
Yosuke Tashiro
Keyword(s):  
16S Rrna ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Membrane Vesicle ◽  
16S Rrna Genes ◽  
Rrna Genes ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Content Type

ABSTRACT We report here the complete genome sequence of Buttiauxella agrestis DSM 9389, which harbors eight 16S rRNA genes classified into three types. The genome sequence of this strain showed a high average nucleotide identity (97.3%) with that of the highly membrane vesicle-producing strain B. agrestis ATCC 33320T.

scholarly journals Complete Genome Sequence of Bacillus cereus Sensu Stricto VKM B-370, Isolated from the Silkworm Bombyx mori

2021 ◽  
Vol 10 (20) ◽  
Author(s):  
Emma G. Piligrimova ◽  
Rustam M. Buzikov ◽  
Olesya A. Kazantseva ◽  
Andrey M. Shadrin
Keyword(s):  
Bacillus Cereus ◽  
Bombyx Mori ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sensu Stricto ◽  
Host Strain ◽  
Gram Positive ◽  
Content Type ◽  
Silkworm Bombyx Mori

ABSTRACT Bacillus cereus is a Gram-positive rod-shaped spore-forming bacterium widespread in different environmental niches. Here, we report the complete genome sequence of Bacillus cereus VKM B-370 from the All-Russian Collection of Microorganisms, the host strain for bacteriophages vB_BtS_B83, vB_BcM_Sam46, vB_BcM_Sam112, and Izhevsk.

scholarly journals Complete Genome Sequence of the Endophytic Bacterium Bacillus cereus PgBE311, Isolated from Panax ginseng

2018 ◽  
Vol 7 (21) ◽  
Author(s):  
Chi Eun Hong ◽  
Jang Uk Kim ◽  
Jung Woo Lee ◽  
Kyong Hwan Bang ◽  
Ick-Hyun Jo
Keyword(s):  
Bacillus Cereus ◽  
Panax Ginseng ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Fungal Pathogens ◽  
Endophytic Bacterium ◽  
Content Type ◽  
Cylindrocarpon Destructans ◽  
Bacterium Bacillus

Bacillus cereus PgBE311, isolated from the root tissue of a 5-year-old Panax ginseng plant, showed activities against the fungal pathogens Cylindrocarpon destructans and Botrytis cinerea. Here, we report the genome sequence of B. cereus PgBE311.

scholarly journals Complete Genome Sequence of Bacillus cereus C1L, a Plant Growth-Promoting Rhizobacterium from the Rhizosphere of Formosa Lily in Taiwan

2017 ◽  
Vol 5 (46) ◽  
Author(s):  
Chien-Jui Huang ◽  
Po-Xing Zheng ◽  
Jheng-Yang Ou ◽  
Yao-Cheng Lin ◽  
Chao-Ying Chen
Keyword(s):  
Plant Growth ◽  
Bacillus Cereus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Fungal Pathogens ◽  
Total Size ◽  
Content Type ◽  
Plant Growth Promoting ◽  
Growth Promoting

ABSTRACT Bacillus cereus C1L, a plant growth-promoting rhizobacterium, provides protection against fungal pathogens in monocot plants. To gain new insights into the biocontrol mechanisms used by this rhizobacterium, we determined the complete genome sequence of B. cereus C1L. One chromosome and three plasmids were identified with a total size of ~6.0 Mb.

scholarly journals Complete Genome Sequence of Sphingobium barthaii KK22, a High-Molecular-Weight Polycyclic Aromatic Hydrocarbon-Degrading Soil Bacterium

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Jiro F. Mori ◽  
Robert A. Kanaly
Keyword(s):  
Molecular Weight ◽  
Polycyclic Aromatic Hydrocarbon ◽  
Aromatic Hydrocarbon ◽  
High Molecular Weight ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Soil Bacterium ◽  
Content Type ◽  
Polycyclic Aromatic

ABSTRACT Sphingobium barthaii KK22T is a high-molecular-weight polycyclic aromatic hydrocarbon-degrading soil bacterium that has been investigated in biotransformation, microbial ecology, and DNA damage studies. The complete genome sequence of S. barthaii revealed four closed circular sequences, including two chromosomes, a megaplasmid, and a smaller plasmid, by hybrid assembly using short- and long-read sequencing technologies.

scholarly journals Complete Genome Sequence of Cupriavidus necator KK10, an Azaarene-Degrading and Polyhydroxyalkanoate-Producing Soil Bacterium

2021 ◽  
Vol 10 (28) ◽  
Author(s):  
Jiro F. Mori ◽  
Miho Nagai ◽  
Robert A. Kanaly
Keyword(s):  
Genome Sequence ◽  
Diesel Fuel ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Cupriavidus Necator ◽  
Soil Bacterium ◽  
Functional Genes ◽  
Content Type

Cupriavidus necator KK10 has been investigated in azaarene and diesel fuel biodegradation studies and is capable of polyhydroxyalkanoate production. Its complete genome sequence revealed two closed circular sequences, the chromosome (6.68 Mb) and plasmid (1.67 Mb). The KK10 genome carries functional genes potentially responsible for azaarene biodegradation and polyhydroxyalkanoate (PHA) biosynthesis.

scholarly journals Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere

2020 ◽  
Vol 9 (27) ◽  
Author(s):  
Mircea Podar ◽  
Joel Turner ◽  
Leah H. Burdick ◽  
Dale A. Pelletier
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Populus Deltoides ◽  
Soil Bacterium ◽  
The Novel ◽  
Content Type ◽  
Eastern Cottonwood ◽  
Long Reads

ABSTRACT Roseimicrobium sp. strain ORNL1 is a soil bacterium that belongs to the phylum Verrucomicrobia and was isolated from the rhizosphere of a forest Eastern cottonwood tree, Populus deltoides, in Tennessee. Its 7.9-Mb chromosome was completely sequenced using PacBio long reads and is predicted to encode 6,288 proteins and 76 RNAs.

scholarly journals Complete Genome Sequence of an Environmental Bacillus cereus Isolate Belonging to the Bacillus anthracis Clade

2020 ◽  
Vol 9 (47) ◽  
Author(s):  
Leonid M. Irenge ◽  
Bertrand Bearzatto ◽  
Jérôme Ambroise ◽  
Jean-Luc Gala
Keyword(s):  
Bacillus Cereus ◽  
Bacillus Anthracis ◽  
Soil Sample ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Virulence Gene ◽  
Large Plasmid ◽  
Content Type

ABSTRACT We report here the complete genome sequence of a Bacillus cereus isolate identified in a soil sample from Namibia. This isolate is closely related to the B. anthracis clade. While the plasmids (500 and 12 kb) carry no detectable B. anthracis virulence gene, the large plasmid shares a 50-kb continuous region similar to plasmid pXO1.

scholarly journals Complete Genome Sequence of a Novel Nonnodulating Rhizobium Species Isolated from Agave americana L. Rhizosphere

2017 ◽  
Vol 5 (46) ◽  
Author(s):  
Víctor Manuel Ruíz-Valdiviezo ◽  
Marco Antonio Rogel-Hernandez ◽  
Gabriela Guerrero ◽  
Clara Ivette Rincón-Molina ◽  
Luis Galdino García-Perez ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Nitrogen Fixing ◽  
Rhizobium Species ◽  
Ribosomal Operon ◽  
Agave Americana

ABSTRACT We report here the complete genome sequence of Rhizobium sp. strain ACO-34A, isolated from Agave americana L. rhizosphere. No common nod genes were found, but there were nif genes for nitrogen fixing. A low average nucleotide identity to reported species supports its designation as a novel Rhizobium species that has a complete ribosomal operon in a plasmid.

scholarly journals Complete Genome Sequence of Thermus thermophilus Strain HB5018, Isolated from Mine Hot Spring in Japan

2021 ◽  
Vol 10 (10) ◽  
Author(s):  
Kentaro Miyazaki ◽  
Toshiyuki Moriya ◽  
Naoki Nemoto ◽  
Tairo Oshima ◽  
Kei Yura ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Strain ◽  
Hot Spring ◽  
Thermus Thermophilus ◽  
Species Conservation ◽  
Average Nucleotide Identity ◽  
Content Type ◽  
The Past

ABSTRACT We isolated Thermus thermophilus strain HB5018 from Mine Hot Spring in Japan, where the type strain HB8 was isolated nearly half a century ago. The complete genome sequence of HB5018 showed 99.1% average nucleotide identity with HB8, suggesting strict species conservation in the habitat over the past 50 years.

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