scholarly journals Draft Genome Sequence and De Novo Assembly of a Fusarium oxysporum f. sp. lycopersici Isolate Collected from the Andean Region in Colombia

2022 ◽  
Author(s):  
Pei-Ling Yu ◽  
James C. Fulton ◽  
Sandra L. Carmona ◽  
Diana Burbano-David ◽  
Luz Stella Barrero ◽  
...  
Keyword(s):  
Fusarium Oxysporum ◽  
Genome Sequence ◽  
Genome Assembly ◽  
De Novo Assembly ◽  
De Novo ◽  
Draft Genome ◽  
Vascular Wilt ◽  
Andean Region ◽  
Content Type ◽  
Draft Genome Assembly

We report a draft genome assembly of the causal agent of tomato vascular wilt, Fusarium oxysporum f. sp. lycopersici isolate 59, obtained from the Andean region in Colombia.

scholarly journals Draft Genome Sequence of Fusarium oxysporum f. sp. albedinis Strain Foa 133, the Causal Agent of Bayoud Disease on Date Palm

2020 ◽  
Vol 9 (29) ◽  
Author(s):  
Slimane Khayi ◽  
Siham Khoulassa ◽  
Fatima Gaboun ◽  
Rabha Abdelwahd ◽  
Ghizlane Diria ◽  
...  
Keyword(s):  
Fusarium Oxysporum ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Date Palm ◽  
Draft Genome ◽  
Gc Content ◽  
Causal Agent ◽  
Vascular Wilt ◽  
Content Type ◽  
Bayoud Disease

ABSTRACT Fusarium oxysporum f. sp. albedinis is the causal agent of vascular wilt of date palm. Here, we report the genome assembly of the Foa 133 strain, which consists of 3,325 contigs with a total length of 56,228,901 bp, a GC content of 47.42%, an N50 value of 131,587 bp, and 3,684 predicted genes.

scholarly journals Draft Genome Sequence of Bacillus marisflavi CK-NBRI-03, Isolated from Agricultural Soil

2020 ◽  
Vol 9 (7) ◽  
Author(s):  
Mayank Gupta ◽  
Puneet Singh Chauhan ◽  
Sudhir K. Sopory ◽  
Sneh L. Singla-Pareek ◽  
Nidhi Adlakha ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Agricultural Soil ◽  
Draft Genome ◽  
Uttar Pradesh ◽  
Draft Genome Sequence ◽  
Positive Bacterium ◽  
Gram Positive ◽  
Content Type ◽  
Draft Genome Assembly

Here, we report the 4.34-Mb draft genome assembly of Bacillus marisflavi CK-NBRI-03 (or P3), a Gram-positive bacterium, with an average G+C content of 48.66%. P3 was isolated from agricultural soil from the Badaun (midwestern plain zone) region of Uttar Pradesh, India.

scholarly journals Genome Sequence of Bacillus thuringiensis Strain MW, a Freshwater Isolate

2020 ◽  
Vol 9 (2) ◽  
Author(s):  
Alexander N. Williams ◽  
Kyle S. MacLea
Keyword(s):  
Bacillus Thuringiensis ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Content Type ◽  
Draft Genome Assembly ◽  
Freshwater Stream ◽  
Biological Pesticide ◽  
Thuringiensis Strain

Bacillus thuringiensis is an agriculturally significant bacterium and common biological pesticide. B. thuringiensis strain MW was isolated from a freshwater stream in Mont Vernon, NH, and sequenced. A draft genome assembly of 5,935,630 bp with a G+C content of 34.86% and an N 50 value of 1,154,949 bp was generated.

scholarly journals Draft Genome Sequence of Bradyrhizobium elkanii TnphoA 33, a Producer of Polyhydroxyalkanoates

2017 ◽  
Vol 5 (8) ◽  
Author(s):  
Erica M. Lopes ◽  
Luciano T. Kishi ◽  
Camila C. Fernandes ◽  
Fernanda Larozza Paganelli ◽  
Lucia M. C. Alves ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Nitrogen Fixing ◽  
Content Type ◽  
Draft Genome Assembly ◽  
Bradyrhizobium Elkanii ◽  
Reading Frames

ABSTRACT The genus Bradyrhizobium comprises bacteria with the ability to form nitrogen-fixing symbioses with legumes. They are of great interest in agriculture, as well as for the production of biopolymers such as polyhydroxyalkanoates. Here, we report the draft genome assembly of Bradyrhizobium elkanii TnphoA 33 comprising 9 Mb, 1,124 contigs, and 9,418 open reading frames.

scholarly journals Draft Genome Assembly of the Sheep Scab Mite, Psoroptes ovis

2018 ◽  
Vol 6 (16) ◽  
pp. e00265-18 ◽  
Author(s):  
Stewart T. G. Burgess ◽  
Kathryn Bartley ◽  
Edward J. Marr ◽  
Harry W. Wright ◽  
Robert J. Weaver ◽  
...  
Keyword(s):  
Genome Assembly ◽  
De Novo ◽  
Gene Prediction ◽  
Draft Genome ◽  
Psoroptes Ovis ◽  
Protein Coding ◽  
Content Type ◽  
Sheep Scab ◽  
Draft Genome Assembly ◽  
Intense Pruritus

ABSTRACT Sheep scab, caused by infestation with Psoroptes ovis, is highly contagious, results in intense pruritus, and represents a major welfare and economic concern. Here, we report the first draft genome assembly and gene prediction of P. ovis based on PacBio de novo sequencing. The ∼63.2-Mb genome encodes 12,041 protein-coding genes.

scholarly journals High-Quality Draft Genome Sequence of the Causal Agent of the Current Panama Disease Epidemic

2019 ◽  
Vol 8 (36) ◽  
Author(s):  
Rachel J. Warmington ◽  
William Kay ◽  
Aaron Jeffries ◽  
Paul O’Neill ◽  
Audrey Farbos ◽  
...  
Keyword(s):  
Fusarium Oxysporum ◽  
Genome Assembly ◽  
Draft Genome ◽  
Vegetative Compatibility Group ◽  
High Quality ◽  
Panama Disease ◽  
Content Type ◽  
Draft Genome Assembly ◽  
Compatibility Group ◽  
Race 4

We present a high-quality draft genome assembly for Fusarium oxysporum f. sp. cubense tropical race 4 (Fusarium odoratissimum), assembled from PacBio reads and consisting of 15 contigs with a total assembly size of 48.59 Mb. This strain appears to belong to vegetative compatibility group complex 01213/16.

scholarly journals Draft Genome Sequence and Annotation of the Lichen-Forming Fungus Arthonia radiata

2018 ◽  
Vol 6 (14) ◽  
Author(s):  
Ellie E. Armstrong ◽  
Stefan Prost ◽  
Damien Ertz ◽  
Martin Westberg ◽  
Andreas Frisch ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Type Species ◽  
De Novo ◽  
Transcriptome Assembly ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Illumina Hiseq ◽  
Content Type ◽  
Mate Pair

ABSTRACT We report here the draft de novo genome assembly, transcriptome assembly, and annotation of the lichen-forming fungus Arthonia radiata (Pers.) Ach., the type species for Arthoniomycetes, a class of lichen-forming, lichenicolous, and saprobic Ascomycota. The genome was assembled using overlapping paired-end and mate pair libraries and sequenced on an Illumina HiSeq 2500 instrument.

scholarly journals Improved Draft Genome Sequence of a Monoteliosporic Culture of the Karnal Bunt (Tilletia indica) Pathogen of Wheat

2018 ◽  
Vol 6 (20) ◽  
Author(s):  
Anil Kumar ◽  
Pallavi Mishra ◽  
Ranjeet Maurya ◽  
A. K. Mishra ◽  
Vijai K. Gupta ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Fungal Pathogen ◽  
Draft Genome ◽  
Karnal Bunt ◽  
Tilletia Indica ◽  
Content Type ◽  
Previous Version ◽  
Draft Genome Assembly

ABSTRACT Karnal bunt of wheat is an internationally quarantined fungal pathogen disease caused by Tilletia indica and affects the international commercial seed trade of wheat. We announce here the first improved draft genome assembly of a monoteliosporic culture of the Tilletia indica fungus, consisting of 787 scaffolds with an approximate total genome size of 31.83 Mbp, which is more accurate and near to complete than the previous version.

scholarly journals High-Quality Draft Genome Sequence of Fusarium oxysporum f. sp. cubense Strain 160527, a Causal Agent of Panama Disease

2019 ◽  
Vol 8 (29) ◽  
Author(s):  
Shuta Asai ◽  
Yu Ayukawa ◽  
Pamela Gan ◽  
Sachiko Masuda ◽  
Ken Komatsu ◽  
...  
Keyword(s):  
Fusarium Oxysporum ◽  
Fusarium Wilt ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Causal Agent ◽  
High Quality ◽  
Panama Disease ◽  
Content Type ◽  
High Quality Genome

Fusarium oxysporum f. sp. cubense is the causal agent of banana Fusarium wilt, also known as Panama disease. Here, we present a high-quality genome sequence of F. oxysporum f. sp. cubense strain 160527. The genome assembly is composed of 12 contigs with a total assembly length of 51,139,495 bp (N 50 contig length, 4,884,632 bp).

scholarly journals Genome Sequence of a California Isolate of Fusarium oxysporum f. sp. lycopersici Race 3, a Fungus Causing Wilt Disease on Tomato

2019 ◽  
Vol 8 (15) ◽  
Author(s):  
Peter M. Henry ◽  
Michelle Stueven ◽  
Sampson Li ◽  
Eugene M. Miyao ◽  
Thomas R. Gordon ◽  
...  
Keyword(s):  
Fusarium Oxysporum ◽  
Genome Assembly ◽  
Draft Genome ◽  
Gc Content ◽  
Wilt Disease ◽  
Read Coverage ◽  
High Quality ◽  
Content Type ◽  
Draft Genome Assembly ◽  
Important Disease

Fusarium wilt of tomato, caused by the soilborne fungus Fusarium oxysporum f. sp. lycopersici, is an increasingly important disease of tomato. This paper reports the high-quality draft genome assembly of F. oxysporum f. sp. lycopersici isolate D11 (race 3), which consists of 39 scaffolds with 57,281,978 bp (GC content, 47.5%), an N 50 of 4,408,267 bp, a mean read coverage of 99.8×, and 17,682 predicted genes.

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