scholarly journals Whole-Genome Sequence of Bacillus megaterium Strain SGAir0080, Isolated from an Indoor Air Sample

2019 ◽  
Vol 8 (50) ◽  
Author(s):  
Namrata Kalsi ◽  
Akira Uchida ◽  
Rikky W. Purbojati ◽  
James N. I. Houghton ◽  
Caroline Chénard ◽  
...  
Keyword(s):  
Single Molecule ◽  
Bacillus Megaterium ◽  
Indoor Air ◽  
Average Length ◽  
Whole Genome Sequence ◽  
Smrt Sequencing ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Air Sample

Bacillus megaterium strain SGAir0080 was isolated from a tropical air sample in Singapore. Its genome was assembled using single-molecule real-time (SMRT) sequencing and MiSeq reads. It has one chromosome of 5.06 Mbp and seven plasmids (average length, 62.8 kbp). It possesses 5,339 protein-coding genes, 130 tRNAs, and 35 rRNAs.

scholarly journals Complete Genome Sequence of Citricoccus sp. Strain SGAir0253, Isolated from Indoor Air in Singapore

2019 ◽  
Vol 8 (37) ◽  
Author(s):  
Lakshmi Chandrasekaran ◽  
Daniela I. Drautz-Moses ◽  
Akira Uchida ◽  
Rikky W. Purbojati ◽  
Anthony Wong ◽  
...  
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Indoor Air ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

Citricoccus sp. strain SGAir0253 was isolated from indoor air collected in Singapore. Its genome sequence was assembled using single-molecule real-time sequencing. It comprises one chromosome of 3.32 Mb and two plasmids of 137 kb and 99 kb. The genome consists of 2,950 protein-coding genes, 49 tRNAs, and 9 rRNAs.

scholarly journals Complete Genome Sequence of Brevundimonas sp. Strain SGAir0440, Isolated from Indoor Air in Singapore

2019 ◽  
Vol 8 (31) ◽  
Author(s):  
Rikky W. Purbojati ◽  
Daniela I. Drautz-Moses ◽  
Akira Uchida ◽  
Anthony Wong ◽  
Megan E. Clare ◽  
...  
Keyword(s):  
Single Molecule ◽  
Indoor Air ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sequencing Data ◽  
Circular Chromosome ◽  
Protein Coding ◽  
Content Type ◽  
Air Samples ◽  
Protein Coding Genes

Brevundimonas sp. strain SGAir0440 was isolated from indoor air samples collected in Singapore. Its genome was assembled using single-molecule real-time sequencing data, resulting in one circular chromosome with a length of 3.1 Mbp. The genome consists of 3,033 protein-coding genes, 48 tRNAs, and 6 rRNA operons.

scholarly journals Complete Genome Sequence of Streptomyces sp. Strain SGAir0924, an Actinobacterium Isolated from Outdoor Air in Singapore

2019 ◽  
Vol 8 (35) ◽  
Author(s):  
Anjali Bansal Gupta ◽  
Akira Uchida ◽  
Rikky W. Purbojati ◽  
Anthony Wong ◽  
Kavita K. Kushwaha ◽  
...  
Keyword(s):  
Single Molecule ◽  
Complete Genome Sequence ◽  
Average Length ◽  
Outdoor Air ◽  
Protein Coding ◽  
Content Type ◽  
Streptomyces Sp ◽  
Protein Coding Genes ◽  
Final Assembly ◽  
Long Reads

Streptomyces sp. strain SGAir0924 was isolated from outdoor air collected in Singapore. Its genome was assembled using long reads generated by single-molecule real-time sequencing. The final assembly had one chromosome of 7.65 Mb and three plasmids with an average length of 142 kb. The genome contained 6,825 protein-coding genes, 68 tRNAs, and 18 rRNAs.

scholarly journals Whole-Genome Sequence of Hafnia alvei HUMV-5920, a Human Isolate

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
María Lázaro-Díez ◽  
Santiago Redondo-Salvo ◽  
Aroa Arboleya-Agudo ◽  
Javier Gonzalo Ocejo-Vinyals ◽  
Itziar Chapartegui-González ◽  
...  
Keyword(s):  
Adult Patient ◽  
Single Molecule ◽  
Genome Assembly ◽  
Complete Genome ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Smrt Sequencing ◽  
Protein Coding ◽  
Hafnia Alvei ◽  
Protein Coding Genes

A clinical isolate of Hafnia alvei (strain HUMV-5920) was obtained from a urine sample from an adult patient. We report here its complete genome assembly using PacBio single-molecule real-time (SMRT) sequencing, which resulted in a chromosome with 4.5 Mb and a circular contig of 87 kb. About 4,146 protein-coding genes are predicted from this assembly.

scholarly journals Complete Genome Sequence of Agrococcus sp. Strain SGAir0287, Isolated from Tropical Air Collected in Singapore

2019 ◽  
Vol 8 (32) ◽  
Author(s):  
Kenny J. X. Lau ◽  
Ana Carolina M. Junqueira ◽  
Akira Uchida ◽  
Rikky W. Purbojati ◽  
James N. I. Houghton ◽  
...  
Keyword(s):  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Smrt Sequencing ◽  
Entire Genome ◽  
Circular Chromosome ◽  
Protein Coding ◽  
Content Type ◽  
Air Samples ◽  
Protein Coding Genes

Agrococcus sp. strain SGAir0287 was isolated from tropical air samples collected in Singapore. Assembled using single-molecule real-time (SMRT) sequencing and MiSeq reads, the genome consists of one circular chromosome of 3,084,767 bp. The entire genome has 2,870 protein-coding genes, 45 tRNAs, and 3 rRNAs.

scholarly journals Complete Genome Sequence of Bacillus megaterium Strain TG1-E1, a Plant Drought Tolerance-Enhancing Bacterium

2018 ◽  
Vol 7 (12) ◽  
Author(s):  
Juan Ignacio Vílchez ◽  
Qiming Tang ◽  
Richa Kaushal ◽  
Wei Wang ◽  
Suhui Lv ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Single Molecule ◽  
Bacillus Megaterium ◽  
Dna Sequences ◽  
Complete Genome ◽  
Whole Genome Sequence ◽  
Plant Tolerance ◽  
Protein Coding ◽  
Single Molecule Sequencing ◽  
Content Type

Based on a combination of next-generation sequencing and single-molecule sequencing, we obtained the whole-genome sequence of Bacillus megaterium strain TG1-E1, which is a highly salt-tolerant rhizobacterium that enhances plant tolerance to drought stress. The complete genome is estimated to be approximately 5.48 Mb containing a total of 5,858 predicted protein-coding DNA sequences.

scholarly journals Complete Genome Sequence of Pediococcus pentosaceus Strain GDIAS 001

2020 ◽  
Vol 9 (12) ◽  
Author(s):  
Maopeng Song ◽  
Yongfei Wang ◽  
Xianyong Ma ◽  
Dun Deng
Keyword(s):  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Trna Genes ◽  
Smrt Sequencing ◽  
Protein Coding ◽  
Pediococcus Pentosaceus ◽  
Content Type ◽  
Protein Coding Genes ◽  
Rna Genes

Pediococcus pentosaceus strain GDIAS 001 was isolated from a tapioca sample in Guangzou, China. The genome of GDIAS 001 was assembled using single-molecule real-time (SMRT) sequencing, and it contains 1 chromosome of 1.83 Mbp and 1,835 protein-coding genes, 71 RNA genes, and 56 tRNA genes.

scholarly journals Complete Genome Sequence of Enterococcus faecalis Strain SGAir0397, Isolated from a Tropical Air Sample Collected in Singapore

2019 ◽  
Vol 8 (33) ◽  
Author(s):  
Rikky W. Purbojati ◽  
Daniela I. Drautz-Moses ◽  
Akira Uchida ◽  
Anthony Wong ◽  
Megan E. Clare ◽  
...  
Keyword(s):  
Enterococcus Faecalis ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sequencing Data ◽  
Circular Chromosome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Air Sample

Enterococcus faecalis strain SGAir0397 was isolated from a tropical air sample collected in Singapore. Its genome was assembled using single-molecule real-time sequencing data and comprises one circular chromosome with a length of 2.69 Mbp. The genome contains 2,595 protein-coding genes, 59 tRNAs, and 12 rRNAs.

scholarly journals Whole-Genome Sequence of Acinetobacter pittii HUMV-6483 Isolated from Human Urine

2017 ◽  
Vol 5 (29) ◽  
Author(s):  
Itziar Chapartegui-González ◽  
María Lázaro-Díez ◽  
Santiago Redondo-Salvo ◽  
Laura Alted-Pérez ◽  
Javier Gonzalo Ocejo-Vinyals ◽  
...  
Keyword(s):  
Single Molecule ◽  
Genome Assembly ◽  
Human Urine ◽  
Complete Genome ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Acinetobacter Pittii

ABSTRACT Acinetobacter pittii strain HUMV-6483 was obtained from urine from an adult patient. We report here its complete genome assembly using PacBio single-molecule real-time sequencing, which resulted in a chromosome with 4.07 Mb and a circular contig of 112 kb. About 3,953 protein-coding genes are predicted from this assembly.

scholarly journals Complete Genome Sequence of Acidithiobacillus ferridurans JAGS, Isolated from Acidic Mine Drainage

2020 ◽  
Vol 9 (13) ◽  
Author(s):  
Jinjin Chen ◽  
Yilan Liu ◽  
Patrick Diep ◽  
Andrew Jo ◽  
Camilla Nesbø ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Mine Drainage ◽  
Gc Content ◽  
Acidic Mine Drainage ◽  
Smrt Sequencing ◽  
Protein Coding ◽  
Content Type

We report a complete genome sequence of Acidithiobacillus ferridurans JAGS, determined using PacBio single-molecule real-time (SMRT) sequencing. The circular genome of JAGS (2,933,811 bp; GC content, 58.57%) contains 3,001 protein-coding sequences, 46 tRNAs, and 6 rRNAs. Predicted genes indicate the potential to fix CO2 and N2 and to utilize Fe2+, S0, and H2 as energy sources.

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