scholarly journals Genome Sequencing of a Novel Coronavirus SARS-CoV-2 Isolate from Iraq

2021 ◽  
Vol 10 (4) ◽  
Author(s):  
Nihad A. M. Al-Rashedi ◽  
Danilo Licastro ◽  
Sreejith Rajasekharan ◽  
Simeone Dal Monego ◽  
Alessandro Marcello ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Illumina Miseq ◽  
Spike Protein ◽  
Protein Coding ◽  
Novel Coronavirus ◽  
First Time

ABSTRACT The coding-complete genome sequence of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain isolated from an Iraqi patient was sequenced for the first-time using Illumina MiSeq technology. There was a D614G mutation in the spike protein-coding sequence. This report is valuable for better understanding the spread of the virus in Iraq.

scholarly journals Complete Genome Sequence of Broad-Host-Range Staphylococcus aureus Myophage ESa1

2020 ◽  
Vol 9 (30) ◽  
Author(s):  
Roshan D’Souza ◽  
Andrey A. Filippov ◽  
Kirill V. Sergueev ◽  
Yunxiu He ◽  
Amanda M. Ward ◽  
...  
Keyword(s):  
Staphylococcus Aureus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Gc Content ◽  
Illumina Miseq ◽  
Broad Host Range ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type

ABSTRACT A potentially therapeutic Twort-like myophage, Esa1, with specificity toward Staphylococcus aureus was isolated from lake water. We report the complete genome sequence of ESa1, assembled using both MinION and Illumina MiSeq reads, consisting of 153,106 bp, with 30.3% GC content, 253 protein coding sequences, 4 tRNAs, and 10,437-bp direct terminal repeats.

scholarly journals Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Causing a COVID-19 Case in Morocco

2020 ◽  
Vol 9 (27) ◽  
Author(s):  
Sanaâ Lemriss ◽  
Amal Souiri ◽  
Narjis Amar ◽  
Nabil Lemzaoui ◽  
Omar Mestoui ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Nasopharyngeal Swab ◽  
Novel Coronavirus ◽  
Swab Specimen ◽  
Moroccan Patient

ABSTRACT Here, we report a complete genome sequence obtained for a novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain isolated from a nasopharyngeal swab specimen of a Moroccan patient with coronavirus disease 2019 (COVID-19).

scholarly journals Complete Genome Sequence of Curtobacterium sp. Strain SGAir0471, Isolated from Singapore Air Samples

2019 ◽  
Vol 8 (47) ◽  
Author(s):  
Phu Pwint Thin Hlaing ◽  
Ana Carolina M. Junqueira ◽  
Akira Uchida ◽  
Rikky W. Purbojati ◽  
Anthony Wong ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Illumina Miseq ◽  
Protein Coding ◽  
Air Samples ◽  
Protein Coding Genes ◽  
Pacbio Rs Ii ◽  
Long Reads

Curtobacterium sp. strain SGAir0471 was isolated from tropical air samples collected in Singapore. The genome was assembled using PacBio RS II long reads and Illumina MiSeq short paired-end reads. The complete genome measures 3.53 Mb and consists of 3,151 protein-coding genes, 49 tRNAs, and 12 rRNAs.

scholarly journals Complete Genome Sequence of a New Megavirus Family Member Isolated from an Inland Water Lake for the First Time in India

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Anirvan Chatterjee ◽  
Farhan Ali ◽  
Disha Bange ◽  
Kiran Kondabagil
Keyword(s):  
Family Member ◽  
Genome Size ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Dna Virus ◽  
Double Stranded Dna ◽  
Water Lake ◽  
First Time

We report here the isolation and complete genome sequencing of a large double-stranded DNA virus, Powai Lake megavirus, for the first time from India. The isolation of a large DNA virus with genome size >1 Mb from India further attests to the prevalence of Giant viruses in different environmental niches.

scholarly journals Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Isolated in Nepal

2020 ◽  
Vol 9 (11) ◽  
Author(s):  
Ranjit Sah ◽  
Alfonso J. Rodriguez-Morales ◽  
Runa Jha ◽  
Daniel K. W. Chu ◽  
Haogao Gu ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Oropharyngeal Swab ◽  
Novel Coronavirus ◽  
Swab Specimen

A complete genome sequence was obtained for a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain isolated from an oropharyngeal swab specimen of a Nepalese patient with coronavirus disease 2019 (COVID-19), who had returned to Nepal after traveling to Wuhan, China.

scholarly journals Complete Genome Sequence of Lelliottia nimipressuralis Type Strain SGAir0187, Isolated from Tropical Air Collected in Singapore

2018 ◽  
Vol 6 (18) ◽  
Author(s):  
Cassie E. Heinle ◽  
Ana Carolina M. Junqueira ◽  
Akira Uchida ◽  
Rikky W. Purbojati ◽  
James N. I. Houghton ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Strain ◽  
Illumina Miseq ◽  
Protein Coding ◽  
Content Type ◽  
Air Samples ◽  
Protein Coding Genes ◽  
Long Reads

ABSTRACT Lelliottia nimipressuralis type strain SGAir0187 was isolated from tropical air samples collected in Singapore. The genome was assembled with an average coverage of 180-fold using Pacific Biosciences long reads and Illumina MiSeq paired-end reads. The genome measures 4.8 Mb and contains 4,424 protein-coding genes, 83 tRNAs, and 25 rRNAs.

scholarly journals Genome Sequencing of the SARS-CoV-2 Delta (B.1.617.2) Variant of Concern Detected in Bangladesh

2021 ◽  
Vol 10 (48) ◽  
Author(s):  
Tanjina Akhtar Banu ◽  
M. Murshed Hasan Sarkar ◽  
Shahina Akter ◽  
Barna Goswami ◽  
Iffat Jahan ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Severe Acute Respiratory Syndrome ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Immune Evasion ◽  
Complete Genome Sequence ◽  
Complete Genome

We report the near-complete genome sequence and phylogenetic analysis of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Delta variant (B.1.617.2) strain. This variant is associated with increased transmission and immune evasion.

scholarly journals Complete Genome Sequence of a Novel Coronavirus (SARS-CoV-2) Isolate from Bangladesh

2020 ◽  
Vol 9 (24) ◽  
Author(s):  
Senjuti Saha ◽  
Roly Malaker ◽  
Mohammad Saiful Islam Sajib ◽  
Md Hasanuzzaman ◽  
Hafizur Rahman ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Nasopharyngeal Swab ◽  
Novel Coronavirus

ABSTRACT The complete genome sequence of a novel coronavirus (severe acute respiratory syndrome coronavirus 2 [SARS-CoV-2]) isolate obtained from a nasopharyngeal swab from a patient with COVID-19 in Bangladesh is reported.

scholarly journals Complete Genome Sequence of Mycoplasma bovis Strain KG4397, Isolated from Cattle in Japan

2019 ◽  
Vol 8 (40) ◽  
Author(s):  
Misako Morimoto ◽  
Tsuyoshi Kenri ◽  
Takashi Ohmori ◽  
Kaho Teshima ◽  
Kazumoto Shibuya ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Respiratory Diseases ◽  
Bacterial Pathogen ◽  
Mycoplasma Bovis ◽  
Whole Genome ◽  
Content Type ◽  
First Time

Mycoplasma bovis is a major bacterial pathogen that causes pneumonia, mastitis, and arthritis in cattle. In this study, we performed whole-genome sequencing of an M. bovis strain isolated in Japan for the first time and announce the complete genome sequence of strain KG4397, which caused respiratory diseases in cattle in 2012.

scholarly journals Complete Genome Sequence of Cupriavidus necator H16 (DSM 428)

2019 ◽  
Vol 8 (37) ◽  
Author(s):  
Gareth T. Little ◽  
Muhammad Ehsaan ◽  
Christian Arenas-López ◽  
Kamran Jawed ◽  
Klaus Winzer ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Cupriavidus Necator ◽  
Rrna Genes ◽  
Trna Genes ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Cupriavidus Necator H16

The hydrogen-utilizing strain Cupriavidus necator H16 (DSM 428) was sequenced using a combination of PacBio and Illumina sequencing. Annotation of this strain reveals 6,543 protein-coding genes, 263 pseudogenes, 64 tRNA genes, and 15 rRNA genes.

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