scholarly journals Complete Genome Sequence of a New Megavirus Family Member Isolated from an Inland Water Lake for the First Time in India

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Anirvan Chatterjee ◽  
Farhan Ali ◽  
Disha Bange ◽  
Kiran Kondabagil
Keyword(s):  
Family Member ◽  
Genome Size ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Dna Virus ◽  
Double Stranded Dna ◽  
Water Lake ◽  
First Time

We report here the isolation and complete genome sequencing of a large double-stranded DNA virus, Powai Lake megavirus, for the first time from India. The isolation of a large DNA virus with genome size >1 Mb from India further attests to the prevalence of Giant viruses in different environmental niches.

scholarly journals Genome Sequencing of a Novel Coronavirus SARS-CoV-2 Isolate from Iraq

2021 ◽  
Vol 10 (4) ◽  
Author(s):  
Nihad A. M. Al-Rashedi ◽  
Danilo Licastro ◽  
Sreejith Rajasekharan ◽  
Simeone Dal Monego ◽  
Alessandro Marcello ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Illumina Miseq ◽  
Spike Protein ◽  
Protein Coding ◽  
Novel Coronavirus ◽  
First Time

ABSTRACT The coding-complete genome sequence of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain isolated from an Iraqi patient was sequenced for the first-time using Illumina MiSeq technology. There was a D614G mutation in the spike protein-coding sequence. This report is valuable for better understanding the spread of the virus in Iraq.

scholarly journals The 474-Kilobase-Pair Complete Genome Sequence of CeV-01B, a Virus Infecting Haptolina ( Chrysochromulina ) ericina (Prymnesiophyceae)

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Lucie Gallot-Lavallée ◽  
António Pagarete ◽  
Matthieu Legendre ◽  
Sebastien Santini ◽  
Ruth-Anne Sandaa ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Marine Phytoplankton ◽  
Dna Virus ◽  
Phaeocystis Globosa ◽  
Double Stranded Dna

We report the complete genome sequence of CeV-01B, a large double-stranded DNA virus infecting the unicellular marine phytoplankton Haptolina (formerly Chrysochromulina ) ericina. CeV-01B and its closest relative Phaeocystis globosa virus define an emerging subclade of the Megaviridae family with smaller genomes and particles than the originally described giant Mimiviridae infecting Acanthamoeba .

scholarly journals Complete Genome Sequence of a Bacteriophage, pVco-5, That Infects Vibrio coralliilyticus, Which Causes Bacillary Necrosis in Pacific Oyster (Crassostrea gigas) Larvae

2018 ◽  
Vol 6 (2) ◽  
Author(s):  
Hyoun Joong Kim ◽  
Jin Woo Jun ◽  
Sib Sankar Giri ◽  
Cheng Chi ◽  
Saekil Yun ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Pacific Oyster ◽  
Marine Bivalve ◽  
Dna Virus ◽  
Specific Phage ◽  
Bivalve Larvae ◽  
Double Stranded Dna ◽  
Vibrio Coralliilyticus

ABSTRACT We report here the complete genome sequence of the Vibrio coralliilyticus-specific phage pVco-5, a double-stranded DNA virus isolated from an oyster hatchery tank. Vibrio coralliilyticus causes bacillary necrosis in marine bivalve larvae; hence, phage pVco-5 could be used to prevent V. coralliilyticus infections in these larvae.

scholarly journals Complete Genome Sequence of Mycoplasma bovis Strain KG4397, Isolated from Cattle in Japan

2019 ◽  
Vol 8 (40) ◽  
Author(s):  
Misako Morimoto ◽  
Tsuyoshi Kenri ◽  
Takashi Ohmori ◽  
Kaho Teshima ◽  
Kazumoto Shibuya ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Respiratory Diseases ◽  
Bacterial Pathogen ◽  
Mycoplasma Bovis ◽  
Whole Genome ◽  
Content Type ◽  
First Time

Mycoplasma bovis is a major bacterial pathogen that causes pneumonia, mastitis, and arthritis in cattle. In this study, we performed whole-genome sequencing of an M. bovis strain isolated in Japan for the first time and announce the complete genome sequence of strain KG4397, which caused respiratory diseases in cattle in 2012.

scholarly journals Complete Genome Sequence of a Lytic Siphoviridae Bacteriophage Infecting Several Serovars of Salmonella enterica

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Rubina Paradiso ◽  
Serena Lombardi ◽  
Maria Grazia Iodice ◽  
Marita Georgia Riccardi ◽  
Massimiliano Orsini ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Salmonella Enterica ◽  
Complete Genome ◽  
Water Buffalo ◽  
Southern Italy ◽  
Lytic Activity ◽  
Coding Sequences ◽  
Double Stranded Dna

The bacteriophage 100268_sal2 was isolated from water buffalo feces in southern Italy, exhibiting lytic activity against several subspecies of Salmonella enterica . This bacteriophage belongs to the Siphoviridae family and has a 125,114-bp double-stranded DNA (ds-DNA) genome containing 188 coding sequences (CDSs).

scholarly journals Complete Genome Sequence of Wohlfahrtiimonas chitiniclastica Strain BM-Y, Isolated from the Pancreas of a Zebra in China

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Wei Zhou ◽  
Mu Li ◽  
Lingwei Zhu ◽  
Fuyou Hua ◽  
Xue Ji ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Gene Cassette ◽  
Whole Genome ◽  
Beta Lactamase ◽  
Extended Spectrum Beta Lactamase ◽  
Extended Spectrum ◽  
First Time

Here, a complete genome sequence of Wohlfahrtiimonas chitiniclastica strain BM-Y is presented. The whole genome is 2.18-Mb and contains a bla VEB-1 gene cassette which endows it with resistance to ceftazidime, ampicillin, tetracycline, etc. To our knowledge, this is the first time that an extended spectrum beta-lactamase (ESBL) type W. chitiniclastica strain has been found.

scholarly journals Complete Genome Sequence of aLily virus XIsolate from Japan

2018 ◽  
Vol 6 (4) ◽  
Author(s):  
Takamichi Nijo ◽  
Yukari Okano ◽  
Masayoshi Kondo ◽  
Hiroaki Okuhara ◽  
Hiroyo Sekimura ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Triple Gene Block ◽  
Start Codon ◽  
Gene Block ◽  
First Time ◽  
Triple Gene Block Protein

ABSTRACTThe complete genome sequence ofLily virus X(LVX), which infects lilies, was determined for the first time from lilies in Japan. As with previous reports, the genome of the Japanese LVX isolate lacked an AUG start codon for the triple gene block protein 3-like region.

scholarly journals Genome Sequence of Chiqui Virus, a Novel Reovirus Isolated from Mosquitoes Collected in Colombia

2018 ◽  
Vol 7 (12) ◽  
Author(s):  
María Angélica Contreras-Gutiérrez ◽  
Hilda Guzman ◽  
Jedson F. Cardoso ◽  
Vsevolod L. Popov ◽  
Marcio R. T. Nunes ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Double Stranded Dna ◽  
The Family ◽  
Dsrna Genome

We report here the complete genome sequence of a novel reovirus, designated Chiqui virus (CHQV) strain CoB38d, that was isolated from a pool of unidentified mosquitoes collected in northern Colombia in 2013. CHQV has nine double-stranded DNA (dsRNA) genome segments and has similarity to viruses belonging to the family Reoviridae, subfamily Spinareovirinae.

scholarly journals Complete Genome Sequence of Psittacine Adenovirus 1, Identified from Poicephalus senegalus in Italy

2018 ◽  
Vol 7 (11) ◽  
Author(s):  
Adelaide Milani ◽  
Gianpiero Zamperin ◽  
Alice Fusaro ◽  
Annalisa Salviato ◽  
Luca Bano ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Full Genome Sequence ◽  
Full Genome ◽  
High Genetic Diversity ◽  
Content Type ◽  
First Time

Using a metagenomics approach, we were able to determine for the first time the full-genome sequence of a psittacine adenovirus 1 isolate that was recovered from the liver of a dead Senegal parrot (Poicephalus senegalus) in Italy. The results of the phylogenetic investigations revealed the existence of high genetic diversity among adenoviruses circulating in psittacine birds.

scholarly journals The Complete Genome Sequence of Trueperella pyogenes UFV1 Reveals a Processing System Involved in the Quorum-Sensing Signal Response

2017 ◽  
Vol 5 (29) ◽  
Author(s):  
Vinícius da Silva Duarte ◽  
Laura Treu ◽  
Stefano Campanaro ◽  
Roberto Sousa Dias ◽  
Cynthia Canedo da Silva ◽  
...  
Keyword(s):  
Quorum Sensing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Processing System ◽  
Content Type ◽  
Trueperella Pyogenes ◽  
Signal Response ◽  
First Time

ABSTRACT We present here the complete genome sequence of Trueperella pyogenes UFV1. The 2.3-Mbp genome contains an extremely interesting AI-2 transporter and processing system related to the quorum-sensing signal response. This specific feature is described in this species for the first time and might be responsible for a new pathogenic behavior.

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