scholarly journals Draft Genome Sequence of Bradyrhizobium elkanii BR 2003, an Efficient Rhizobium Strain for Cajanus, Canavalia, Crotalaria, and Indigofera

2020 ◽  
Vol 9 (11) ◽  
Author(s):  
Jerri Édson Zilli ◽  
Jean Luiz Simoes-Araujo ◽  
Luc Felicianus Marie Rouws ◽  
Luis Henrique de Barros Soares
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Rhizobium Strain ◽  
Content Type ◽  
Leguminous Species ◽  
Bradyrhizobium Elkanii

We report here the annotated draft genome sequence of the rhizobium strain BR 2003. This strain is able to establish symbiosis and to fix nitrogen with a broad range of leguminous species. The estimation of the average nucleotide identity confirmed the strain as a member of Bradyrhizobium elkanii.

scholarly journals Draft Genome Sequence of Bacillus albus Strain IB84, Isolated from Mexican Soil

2021 ◽  
Vol 10 (17) ◽  
Author(s):  
Jorge H. García-García ◽  
Carlos J. Moreno-Peña ◽  
Cesar I. Hernández-Vásquez ◽  
Luis J. Galán-Wong ◽  
Benito Pereyra-Alférez
Keyword(s):  
New Species ◽  
Bacillus Thuringiensis ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Gene Sequences ◽  
Content Type ◽  
A New Species

ABSTRACT Bacillus albus is a new species, but it lies on the borderline with Bacillus thuringiensis. In this work, we report a strain previously identified as Bacillus thuringiensis IB84, which now, based on average nucleotide identity and rRNA 16S, gyrB, groEL, and xre gene sequences, must be identified as Bacillus albus.

scholarly journals Draft Genome Sequence of Acidovorax sp. Strain NB1, Isolated from a Nitrite-Oxidizing Enrichment Culture

2019 ◽  
Vol 8 (33) ◽  
Author(s):  
Hiroto Ide ◽  
Kento Ishii ◽  
Hirotsugu Fujitani ◽  
Satoshi Tsuneda
Keyword(s):  
Genome Sequence ◽  
Enrichment Culture ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Content Type ◽  
Nitrite Oxidizing Bacteria ◽  
Genomic Relatedness

Here, we report the draft genome sequence of Acidovorax sp. strain NB1, isolated from an enrichment culture of nitrite-oxidizing bacteria (NOB). Genes involved in denitrification were found in the draft genome of NB1. The closest strain to NB1 based on genomic relatedness is Acidovorax sp. strain GW101-3H11, with 91.5% average nucleotide identity.

scholarly journals Draft Genome Sequence of Environmental Isolate Acinetobacter nosocomialis U20-HoPe-S34-3 from Germany

2021 ◽  
Vol 10 (21) ◽  
Author(s):  
Gottfried Wilharm
Keyword(s):  
Genome Sequence ◽  
Type Strain ◽  
Draft Genome ◽  
Environmental Isolate ◽  
Draft Genome Sequence ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Content Type

The draft genome sequence of Acinetobacter nosocomialis U20-HoPe-S34-3, isolated from soil sampled from the banks of the river Holtemme in Germany, is provided. The strain has an average nucleotide identity of 98.3% to the type strain of the species.

scholarly journals Draft Genome Sequence of Bradyrhizobium elkanii TnphoA 33, a Producer of Polyhydroxyalkanoates

2017 ◽  
Vol 5 (8) ◽  
Author(s):  
Erica M. Lopes ◽  
Luciano T. Kishi ◽  
Camila C. Fernandes ◽  
Fernanda Larozza Paganelli ◽  
Lucia M. C. Alves ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Nitrogen Fixing ◽  
Content Type ◽  
Draft Genome Assembly ◽  
Bradyrhizobium Elkanii ◽  
Reading Frames

ABSTRACT The genus Bradyrhizobium comprises bacteria with the ability to form nitrogen-fixing symbioses with legumes. They are of great interest in agriculture, as well as for the production of biopolymers such as polyhydroxyalkanoates. Here, we report the draft genome assembly of Bradyrhizobium elkanii TnphoA 33 comprising 9 Mb, 1,124 contigs, and 9,418 open reading frames.

scholarly journals Draft Genome Sequence of Corynebacterium kefirresidentii SB, Isolated from Kefir

2017 ◽  
Vol 5 (37) ◽  
Author(s):  
Sonja Blasche ◽  
Yongkyu Kim ◽  
Kiran R. Patil
Keyword(s):  
Genome Sequence ◽  
Novel Species ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Gram Positive ◽  
Kefir Grains

ABSTRACT The genus Corynebacterium includes Gram-positive species with a high G+C content. We report here a novel species, Corynebacterium kefirresidentii SB, isolated from kefir grains collected in Germany. Its draft genome sequence was remarkably dissimilar (average nucleotide identity, 76.54%) to those of other Corynebacterium spp., confirming that this is a unique novel species.

scholarly journals Draft Genome Sequence of Streptomyces hygroscopicus subsp. hygroscopicus NBRC 16556

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Hisayuki Komaki ◽  
Natsuko Ichikawa ◽  
Akio Oguchi ◽  
Moriyuki Hamada ◽  
Tomohiko Tamura ◽  
...  
Keyword(s):  
Secondary Metabolites ◽  
Genome Sequence ◽  
Draft Genome ◽  
Genome Mining ◽  
Culture Collection ◽  
Streptomyces Hygroscopicus ◽  
Draft Genome Sequence ◽  
Nucleotide Identity ◽  
Taxonomic Identification ◽  
Average Nucleotide Identity

Here, we report the draft genome sequence of strain NBRC 16556, deposited as Streptomyces hygroscopicus subsp. hygroscopicus into the NBRC culture collection. An average nucleotide identity analysis confirmed that the taxonomic identification is correct. The genome sequence will serve as a valuable reference for genome mining to search new secondary metabolites.

scholarly journals Draft Genome Sequence of a Novel “Candidatus Liberibacter” Species Detected in a Zanthoxylum Species from Bhutan

2020 ◽  
Vol 9 (40) ◽  
Author(s):  
Grant A. Chambers ◽  
Nerida J. Donovan ◽  
Daniel R. Bogema ◽  
Namgay Om ◽  
George A. C. Beattie ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
Draft Genome Sequence ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Coding Sequences ◽  
Total Length ◽  
Candidatus Liberibacter ◽  
Unidentified Species

ABSTRACT The draft genome sequence of a novel “Candidatus Liberibacter” species detected in an unidentified species of Zanthoxylum (Rutaceae) collected in Bhutan is reported. The total length is 1,408,989 bp with 1,169 coding sequences in 96 contigs, a GC content of 37.3%, and 76 to 77% average nucleotide identity with several other “Ca. Liberibacter” species.

scholarly journals Draft Genome Sequence of Bradyrhizobium elkanii Strain SEMIA 938, Used in Commercial Inoculants for Lupinus spp. in Brazil

2019 ◽  
Vol 8 (28) ◽  
Author(s):  
Mariangela Hungria ◽  
Jakeline Renata Marçon Delamuta ◽  
Renan Augusto Ribeiro ◽  
Marco Antonio Nogueira
Keyword(s):  
Nitrogen Fixation ◽  
Genome Sequence ◽  
Draft Genome ◽  
High Capacity ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Nodulation Genes ◽  
Bradyrhizobium Elkanii ◽  
Commercial Inoculants

Due to its high capacity for nitrogen fixation, strain SEMIA 938 is used in commercial inoculants for lupins in Brazil. Its genome was estimated at 8,780,064 bp and indicates that it belongs to the Bradyrhizobium elkanii species, while the analysis of nodulation genes classifies the strain in the symbiovar sojae.

scholarly journals Draft Genome Sequence of Paraburkholderia sp. UYCP14C, a Rhizobium Strain Isolated from Root Nodules of Calliandra parvifolia

2019 ◽  
Vol 8 (16) ◽  
Author(s):  
Mauricio Langleib ◽  
Martín Beracochea ◽  
María Zabaleta ◽  
Federico Battistoni ◽  
José Sotelo-Silveira ◽  
...  
Keyword(s):  
Nitrogen Fixation ◽  
Genome Size ◽  
Genome Sequence ◽  
Root Nodules ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Rhizobium Strain ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type

Here, we present the draft genome sequence of strain UYCP14C, a rhizobium isolated from Calliandra parvifolia nodules. The assembled genome size was around 9.8 million bp, containing 9,031 predicted protein-coding sequences, including several symbiotic and nitrogen fixation genes.

scholarly journals Draft Genome Sequence of Streptomyces sp. M1013, a Close Relative of Streptomyces ambofaciens and Streptomyces coelicolor

2017 ◽  
Vol 5 (29) ◽  
Author(s):  
Drago Haas ◽  
Claude Gerbaud ◽  
Nevzat Sahin ◽  
Jean-Luc Pernodet ◽  
Sylvie Lautru
Keyword(s):  
Genome Sequence ◽  
Streptomyces Coelicolor ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Close Relative ◽  
Average Nucleotide Identity ◽  
Content Type ◽  
Streptomyces Sp ◽  
Medicago Arborea ◽  
Streptomyces Ambofaciens

ABSTRACT We report the draft genome sequence of Streptomyces sp. M1013, a strain isolated from the Medicago arborea rhizosphere in Izmir, Turkey. An average nucleotide identity (ANI) analysis reveals that this strain belongs to the same species as Streptomyces canus ATCC12647 and is closely related to Streptomyces ambofaciens and Streptomyces coelicolor.

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