Raman and infrared spectra, conformational stability, vibrational assignment, and ab initio calculations of cis-1,3-dichloropropene

1993 ◽  
Vol 71 (10) ◽  
pp. 1751-1763 ◽  
Author(s):  
J.R. Durig ◽  
T.G. Costner ◽  
T.S. Little
Keyword(s):  
Transition State ◽  
Ab Initio ◽  
Conformational Stability ◽  
Basis Set ◽  
Basis Sets ◽  
Field Calculation ◽  
Harmonic Force ◽  
Gauche Conformer ◽  
Hartree Fock ◽  
Equilibrium Geometries

The Raman (3200−10 cm−1) and infrared (3200−20 cm−1) spectra of gaseous and solid cis-1,3-dichloropropene, cis-ClHC=CHCH2Cl, have been recorded. Additionally, the Raman spectrum of the liquid with qualitative depolarization data has also been obtained. These spectral data have been interpreted on the basis that the molecule exists predominantly in the gauche (allylic chlorine atom oriented gauche to the double bond) conformation in all physical phases. Some bands in the infrared spectrum of the gas could be due to a second higher energy conformer but the lack of corresponding Raman bands casts doubt on such an assignment. Ab initio Hartree–Fock gradient calculations employing the RHF/6-31G* basis set are consistent with two minima that correspond to the two equivalent gauche forms for the potential surface for the internal rotation about the C—C bond. These minima occur at dihedral angles, [Formula: see text] ClCCC, of 122° and 238° (0° corresponds to the syn conformation) and the gauche to gauche barrier at the 180° transition state, which corresponds to the anti structure, is 342 cm−1. The barrier from the gauche minima to the syn (0°) structure, which is also a transition state, is 2425 cm−1. Complete equilibrium geometries for the gauche structure have been determined with the RHF/3-21G*, RHF/6-31G*, and MP2/6-31G* basis sets. A normal coordinate analysis utilizing a harmonic force field calculation with the RHF/3-21G* basis set has been carried out for the gauche conformer. The results are discussed and compared with the corresponding quantities obtained for some similar molecules.

The simplified ab initio method calculation of linear polarizability

1973 ◽  
Vol 26 (5) ◽  
pp. 921 ◽  
Author(s):  
RD Brown ◽  
GR Williams
Keyword(s):  
Ab Initio ◽  
Small Molecules ◽  
Basis Set ◽  
Basis Sets ◽  
Orbital Method ◽  
Polarizability Anisotropy ◽  
Minimal Basis ◽  
Hartree Fock ◽  
Numerical Performance ◽  
Experimental Values

The simplified ab-initio molecular-orbital method described previously is particularly suited to the calculation of polarizabilities by the non-perturbative coupled Hartree-Fock technique. Trial calculations on CO and HF, for which comparison with corresponding ab-initio calculations is possible, show that the method gives an adequate numerical performance. Minimal basis set calculations in general tend to give values that are considerably too low because of inadequate flexibility of the basis and this is the origin of the large discrepancy between theory and experiment, especially for small molecules. ��� Results are also reported for N2O and O3. For these larger systems the SAI results with minimal basis sets are noticeably nearer experimental values. The polarizability anisotropy for N2O is particularly well reproduced by the SAI method. �

Ab initio studies of isocyanatoborane and difluoroisocyanatoborane; bent or linear BNCO chains?

1991 ◽  
Vol 69 (6) ◽  
pp. 1000-1005 ◽  
Author(s):  
Susan Ellis ◽  
Edward G. Livingstone ◽  
Nicholas P. C. Westwood
Keyword(s):  
Carbon Atom ◽  
Ab Initio Calculations ◽  
Ab Initio ◽  
Potential Surface ◽  
Energy Difference ◽  
Basis Set ◽  
Basis Sets ◽  
Hartree Fock ◽  
Split Valence ◽  
Valence Basis Set

Ab initio calculating at the 3-21G, 6-31G*, 6-31G**, 6-311G*, and 6-311G** Hartree–Fock levels, have been performed on the unknown H2BNCO and F2BNCO molecules in order to establish the geometries of these isoelectronic propadienone analogues. For H2BNCO the double split valence basis sets lead to linear BNCO chains, whereas either a triple split valence basis set, or the inclusion of correlation to second order (MP2/6-31G*) gives trans-bent structures. These have angles at nitrogen of 153.6° (6-311G*) or 149.9° (MP2/6-31G*), with the potential surface for angle bending extremely flat, and 0.5 kJ mol−1 (6-311 G*) or 1.12 kJ mol−1 (MP2/6-31 G*) separating the C2v and Cs structures. For the bent structures there is a small trans-bend (4–6°) at the carbon atom. The F2BNCO molecule is also linear at the 3-21G level, but is, however, already trans-bent (145.6° at nitrogen, 175.9° at carbon) at the 6-31G* Hartree–Fock level; 1.47 kJ mol−1 separates the bent and linear structures. The triple split valence basis set 6-311G* leads to a further decrease in the angle at nitrogen (141.0°), and a similar NCO angle (175.9°), with the bent structure favoured by 3.85 kJ mol−1. MP2/6-31G* calculations give a minimum with an angle at nitrogen of 140.2°, and a bent-linear energy difference of 3.58 kJ mol−1. Key words: ab initio calculations, isocyanatoboranes, structures, quasilinearity, propadienone analogues.

scholarly journals CONFORMATIONAL EQUILIBRIUM AND SPECTROSCOPIC PROPERTIES OF CALIX[4]ARENE: THEORETICAL STUDY USING AB INITIO METHOD

2010 ◽  
Vol 8 (3) ◽  
pp. 397-403 ◽  
Author(s):  
Hanggara Sudrajat ◽  
Ria Armunanto
Keyword(s):  
Ab Initio ◽  
Conformational Equilibrium ◽  
Spectroscopic Properties ◽  
Molecular Structures ◽  
Basis Set ◽  
Basis Sets ◽  
Molecular Orbital Calculations ◽  
Stable Conformer ◽  
Hartree Fock ◽  
Partial Cone

Molecular structures were optimized for the calix[4]arene by ab initio method at the Hartree-Fock level of theory using LANL2DZ and 6-311G basis sets. Conformational equilibrium of four calix[4]arene conformers are reported. The results are compared with experiment, force field, and semiempirical molecular orbital calculations. General trends in relative stabilities of calix[4]arene decrease in following order: cone > partial-cone > 1,2-alternate > 1,3-alternate. The most stable conformer is the cone conformer that is stabilized by an array of four hydrogen bonds and these results agree with the reported experimental observations. All structures were analyzed using theoretical IR, UV-Vis, and 1H NMR spectra attributed to the conformational equilibrium at the Hartree-Fock level of theory using LANL2DZ basis set.     Keywords: ab initio calculation, calix[4]arene, conformations, cone

Ab initio MO Optimizations of Osmiumtetracarbonyldihydride and Metallacyclophanes with two Osmium Atoms and their Molecular Complexes with Different Guests

1998 ◽  
Vol 53 (10) ◽  
pp. 1223-1235
Author(s):  
Inge Warttmann ◽  
Günter Häfelinger
Keyword(s):  
Ab Initio ◽  
Density Functional ◽  
Cyano Group ◽  
Single Point ◽  
Molecular Complexes ◽  
Basis Set ◽  
Basis Sets ◽  
Basis Set Superposition Error ◽  
Hartree Fock ◽  
Surprising Effect

AbstractAb initio Hartree-Fock (HF) and density functional (DFT) optimizations on the test m olecule osmiumtetracarbonyldihydride (13) with various basis sets show that the lanl2mb pseudopotential basis set for osmium leads in the HF approximation to more reliable molecular geometries than the DFT calculations. This HF procedure was used for the optimizations of molecular geometries of three isomeric 4,4,4,4,17,17,17,17-octacarbonyl-4,17-diosma[7.7]ortho-, meta- and paracyclophanes 1 to 3, of which 3 was found to be predestined for formation of various host-guest complexes with possible guests benzene (4), fluorobenzene (5), 1,3,5- trifluorobenzene (6), 1,2,4,5-tetrafluorobenzene (7), hexafluorobenzene (8), fluoroanil (9), tetrafluoroethene (10), tetracyanoethene (11) and aniline (12). Results of optimized hostguest geometries are presented graphically for inclusions and associations of guest 4 to 12 with 3. Calculated lanl2mb interaction energies, after correction for basis set superposition error (BSSE), remain favourable only for inclusion of 5 and associations of 5, 10, 11 and 12. Additionally lanl2dz single point calculations for inclusion, which may not need BSSE correction because of the improved basis set, are favourable for 6 and 12. According to lanl2mb HOMO and LUMO energies, 3 may as well easily donate or accept electrons. This may be an interpretation to the surprising effect, that Mulliken total charges are positive on the electron accepting guest molecules 4 to 11. There are geometrical peculiarities in the optimized host-guest complexes for inclusion and association. Fluorine atoms of 5 to 10 and nitrogen atoms of a cyano group of 11 and the amino group of 12 like to come close to one or two carbonyl groups. Similar distances of 2.70 Å to 3.57 Å between the O atom of the carbonyl group and the F atom or N atom appear in all optimizations of inclusion and association of 5 to 12 except in the case of association of tetrafluoroethene (10).

A Systematic DFT Study of Two Elementary Steps Involving Hydrogen Peroxide and the Hydroxyl Radical in the Fenton Reaction

2018 ◽  
Author(s):  
Danilo Carmona ◽  
David Contreras ◽  
Oscar A. Douglas-Gallardo ◽  
Stefan Vogt-Geisse ◽  
Pablo Jaque ◽  
...  
Keyword(s):  
Hydrogen Peroxide ◽  
Hydroxyl Radical ◽  
Ab Initio ◽  
Fenton Reaction ◽  
Basis Set ◽  
Basis Sets ◽  
Dft Methods ◽  
Elementary Steps ◽  
Oxygen Oxygen ◽  
Complete Basis Set

The Fenton reaction plays a central role in many chemical and biological processes and has various applications as e.g. water remediation. The reaction consists of the iron-catalyzed homolytic cleavage of the oxygen-oxygen bond in the hydrogen peroxide molecule and the reduction of the hydroxyl radical. Here, we study these two elementary steps with high-level ab-initio calculations at the complete basis set limit and address the performance of different DFT methods following a specific classification based on the Jacob´s ladder in combination with various Pople's basis sets. Ab-initio calculations at the complete basis set limit are in agreement to experimental reference data and identified a significant contribution of the electron correlation energy to the bond dissociation energy (BDE) of the oxygen-oxygen bond in hydrogen peroxide and the electron affinity (EA) of the hydroxyl radical. The studied DFT methods were able to reproduce the ab-initio reference values, although no functional was particularly better for both reactions. The inclusion of HF exchange in the DFT functionals lead in most cases to larger deviations, which might be related to the poor description of the two reactions by the HF method. Considering the computational cost, DFT methods provide better BDE and EA values than HF and post--HF methods with an almost MP2 or CCSD level of accuracy. However, no systematic general prediction of the error based on the employed functional could be established and no systematic improvement with increasing the size in the Pople's basis set was found, although for BDE values certain systematic basis set dependence was observed. Moreover, the quality of the hydrogen peroxide, hydroxyl radical and hydroxyl anion structures obtained from these functionals was compared to experimental reference data. In general, bond lengths were well reproduced and the error in the angles were between one and two degrees with some systematic trend with the basis sets. From our results we conclude that DFT methods present a computationally less expensive alternative to describe the two elementary steps of the Fenton reaction. However, choice of approximated functionals and basis sets must be carefully done and the provided benchmark allows a systematic validation of the electronic structure method to be employed

scholarly journals Stable Occupancy of Hydrogen Molecules in Clathrate Hydrates and + THF Clathrate Hydrates Determined by Ab Initio Calculations

2010 ◽  
Vol 2010 ◽  
pp. 1-6 ◽  
Author(s):  
Prasad Yedlapalli ◽  
Sangyong Lee ◽  
Jae W. Lee
Keyword(s):  
Ab Initio ◽  
Binding Energies ◽  
Clathrate Hydrates ◽  
Basis Set ◽  
Large Cavity ◽  
Basis Sets ◽  
Pure Hydrogen ◽  
Point Energy ◽  
Small Cavity ◽  
Hydrogen Molecules

Structure II clathrate hydrates of pure hydrogen and binary hydrates of are studied using ab initio calculations to determine the stable occupancies of small cavities. Ab initio calculations are carried out for a double cavity consisting of one dodecahedron (small cavity) and one hexakaidecahedron (large cavity). These two cavities are attached to each other as in sII hydrates to form a double cavity. One or two molecules are placed in the small cavity and one THF (or 4 molecules) molecule is placed in the large cavity. We have determined the binding energies of the double cavities at the MP2 level using various basis sets (3-21G, 3-21G(2p), 3-21 G(2p), 6-31G, 6-31G(2p), and 6-31 G(2p)). Different basis sets yield different stable occupancies of the small cavity. The results from the highest basis set (6-31 G(2p) with zero point energy corrections) indicate that the single occupancy is slightly more favorable than the double occupancy in both the cases of pure hydrates and THF + double hydrates.

scholarly journals QM AND AB INITIO INVESTIGATION ON THE HYDROGEN BONDING, NMR CHEMICAL SHIFTS AND SOLVENT EFFECTS ON THE DPPE

2010 ◽  
Vol 7 (3) ◽  
pp. 260-272
Author(s):  
M. Monajjemi ◽  
A. Nouri ◽  
H. Monajemi
Keyword(s):  
Hydrogen Bonding ◽  
Ab Initio ◽  
Atomic Orbital ◽  
Theoretical Data ◽  
Basis Sets ◽  
Stable Complex ◽  
Head Group ◽  
Water Molecules ◽  
Hartree Fock ◽  
Zwitterionic Form

The hydrogen bonding effects that were produced from interaction of membrane lipid dipalmitoylphosphatidyl-ethanolamine (DPPE) with 1-5 water molecules, has been theoretically  investigated through the quantum mechanical calculations at the Hartree-Fock level of theory and the 3-21G, 6-31G and 6-31G* basis sets with the computational package of Gaussian 98. According to the obtained results of the structural optimization of the isolated DPPE in the gas phase, we can see the evidences of interactions in the head group of this macromolecule (from the molecular point of view we have a proton transfer from the ammonium group to the phosphate oxygen of zwitterionic form. As we know that the hydrogen bonding of DPPE with water molecules which have surrounded its head group plays an important role in the permeability of DPPE. So, in order to understand the microscopic physico-chemical nature of this subject we have analyzed bond and torsion angles of DPPE before and after added water molecules.  In this paper we have theoretically studied the complexes DPPE with water molecules which have surrounded its head group. As mentioned before, this theoretically study has been done through Hartree-Fock level of theory by using simple basis sets. Theoretical data shows that the interaction of head group of DPPE with water molecules causes some changes in the geometry of DPPE which were explained by the contribution of zwitterionic form of DPPE macromolecule, and finally hydrated DPPE becomes stable complex. Comparison between theoretical and experimental geometry data of DPPE macromolecule shows that the calculation at the HF/3-21 level of theory produces results which they are in better agreement with the experimental data. Moreover the hydrogen bonding effects on the NMR shielding tensor of selected atoms in the hydrated complexes of DPPE were reported. The ";Gauge Including Atomic Orbitals"; (GIAO) approaches within the SCF-Hartree-Fock approximation have been used in order to investigate the influence of hydrogen bonding of DPPE-water complex on the shielding tensors. Finally, the solvent affects on the stability of DPPE macromolecule, dipole moment and atomic charge of some selected atoms of DPPE molecule was discussed using Onsager model and Merz-Singh-Kolman schema.   Keywords  : Gauge Including Atomic Orbital, DPPE, hydrogen bonding, solvation, quantum mechanics, ab initio

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