COMBINING LOCATION AND EXPRESSION DATA FOR PRINCIPLED DISCOVERY OF GENETIC REGULATORY NETWORK MODELS

2001 ◽  
Author(s):  
ALEXANDER J. HARTEMINK ◽  
DAVID K. GIFFORD ◽  
TOMMI S. JAAKKOLA ◽  
RICHARD A. YOUNG
Keyword(s):  
Regulatory Network ◽  
Network Models ◽  
Genetic Regulatory Network ◽  
Expression Data

Control in Inhibitory Genetic Regulatory Network Models

2020 ◽  
Author(s):  
D. Ogorelova ◽  
F. Sadyrbaev ◽  
V. Sengileyev
Keyword(s):  
Gene Regulatory Networks ◽  
Regulatory Network ◽  
Regulatory Networks ◽  
Network Models ◽  
Genetic Regulatory Network ◽  
Field Analysis ◽  
Geometrical Approach ◽  
Full Generality ◽  
First Order ◽  
Gene Regulatory

The system of two the first order ordinary differential equations arising in the gene regulatory networks theory is studied. The structure of attractors for this system is described for three important behavioral cases: activation, inhibition, mixed activation-inhibition. The geometrical approach combined with the vector field analysis allows treating the problem in full generality. A number of propositions are stated and the proof is geometrical, avoiding complex analytic. Although not all the possible cases are considered, the instructions are given what to do in any particular situation.

scholarly journals Reconstruction of the Regulatory Network for Bacillus subtilis and Reconciliation with Gene Expression Data

2016 ◽  
Vol 7 ◽  
Author(s):  
José P. Faria ◽  
Ross Overbeek ◽  
Ronald C. Taylor ◽  
Neal Conrad ◽  
Veronika Vonstein ◽  
...  
Keyword(s):  
Gene Expression ◽  
Bacillus Subtilis ◽  
Gene Expression Data ◽  
Regulatory Network ◽  
Expression Data

scholarly journals Improving gene regulatory network structure using redundancy reduction in the MRNET algorithm

RSC Advances ◽  
2017 ◽  
Vol 7 (37) ◽  
pp. 23222-23233 ◽  
Author(s):  
Wei Liu ◽  
Wen Zhu ◽  
Bo Liao ◽  
Haowen Chen ◽  
Siqi Ren ◽  
...  
Keyword(s):  
Systems Biology ◽  
Gene Regulatory Network ◽  
Gene Regulatory Networks ◽  
Network Structure ◽  
Regulatory Network ◽  
Regulatory Networks ◽  
Central Problem ◽  
Expression Data ◽  
Redundancy Reduction ◽  
Gene Regulatory

Inferring gene regulatory networks from expression data is a central problem in systems biology.

Connecting quantitative regulatory-network models to the genome

2007 ◽  
Vol 23 (13) ◽  
pp. i367-i376 ◽  
Author(s):  
Yue Pan ◽  
Tim Durfee ◽  
Joseph Bockhorst ◽  
Mark Craven
Keyword(s):  
Regulatory Network ◽  
Network Models

scholarly journals Gene regulatory network models in response to sugars in the plant circadian system

2018 ◽  
Vol 457 ◽  
pp. 137-151 ◽  
Author(s):  
Takayuki Ohara ◽  
Timothy J. Hearn ◽  
Alex A.R. Webb ◽  
Akiko Satake
Keyword(s):  
Gene Regulatory Network ◽  
Regulatory Network ◽  
Network Models ◽  
Circadian System ◽  
Gene Regulatory
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