Palaeolatitudinal distribution of the Ediacaran macrobiota

2021 ◽  
pp. jgs2021-030
Author(s):  
Catherine E. Boddy ◽  
Emily G. Mitchell ◽  
Andrew Merdith ◽  
Alexander G. Liu
Keyword(s):  
Taxonomic Composition ◽  
Supplementary Information ◽  
Cambrian Explosion ◽  
Content Type ◽  
Link Type ◽  
Environmental Perturbations ◽  
Significant Difference ◽  
Evolutionary Trajectories ◽  
Cambrian Radiation ◽  
Supplementary Material

Macrofossils of the late Ediacaran Period (c. 579–539 Ma) document diverse, complex multicellular eukaryotes, including early animals, prior to the Cambrian radiation of metazoan phyla. To investigate the relationships between environmental perturbations, biotic responses and early metazoan evolutionary trajectories, it is vital to distinguish between evolutionary and ecological controls on the global distribution of Ediacaran macrofossils. The contributions of temporal, palaeoenvironmental and lithological factors in shaping the observed variations in assemblage taxonomic composition between Ediacaran macrofossil sites are widely discussed, but the role of palaeogeography remains ambiguous. Here we investigate the influence of palaeolatitude on the spatial distribution of Ediacaran macrobiota through the late Ediacaran Period using two leading palaeogeographical reconstructions. We find that overall generic diversity was distributed across all palaeolatitudes. Among specific groups, the distributions of candidate ‘Bilateral’ and Frondomorph taxa exhibit weakly statistically significant and statistically significant differences between low and high palaeolatitudes within our favoured palaeogeographical reconstruction, respectively, whereas Algal, Tubular, Soft-bodied and Biomineralizing taxa show no significant difference. The recognition of statistically significant palaeolatitudinal differences in the distribution of certain morphogroups highlights the importance of considering palaeolatitudinal influences when interrogating trends in Ediacaran taxon distributions.Supplementary material: Supplementary information, data and code are available at https://doi.org/10.6084/m9.figshare.c.5488945Thematic collection: This article is part of the Advances in the Cambrian Explosion collection available at: https://www.lyellcollection.org/cc/advances-cambrian-explosion

scholarly journals Discussion on ‘Tabelliscolex (Cricocosmiidae: Palaeoscolecidomorpha) from the early Cambrian Chengjiang Biota and the evolution of seriation in Ecdysozoa’ by Shi et al. 2021 (JGS, jgs2021-060)

2021 ◽  
pp. jgs2021-111
Author(s):  
Martin R. Smith ◽  
Alavya Dhungana
Keyword(s):  
Bayesian Approach ◽  
Early Cambrian ◽  
Content Type ◽  
Animal Body ◽  
Link Type ◽  
Stem Group ◽  
Cambrian Radiation ◽  
Supplementary Material ◽  
Chengjiang Biota

Exceptionally preserved fossils are key to reconstructing the origin of the modern animal body plans in the Cambrian radiation. The Panarthropod phyla Euarthropoda, Onychophora and Tardigrada have roots in a ‘lobopodian’ grade typified by broadly cylindrical organisms with sclerotized dorsal plates and paired ventral projections. A similar anatomical configuration has been taken to link certain palaeoscolecid worms with the earliest ecdysozoans. Shi et al. (2021) contend that these similarities evolved convergently, and that palaeoscolecids are priapulan relatives with little bearing on the panarthropod evolution.Here we show that this conclusion holds only under a particular treatment of inapplicable character states with known shortcomings. When inapplicable tokens are handled more rigorously, palaeoscolecids are most parsimoniously reconstructed as stem-group panarthropods with homologous dorsal plates and ventral projections – highlighting the degree to which the treatment of inapplicable data can influence fundamental evolutionary conclusions. As the position of palaeoscolecids depends so strongly on the underlying methodology, and is highly uncertain under a Bayesian approach, we consider it premature to exclude the possibility that panarthropods evolved from a grade of palaeoscolecids with dorsal plates and ventral projections.Supplementary material:https://doi.org/10.6084/m9.figshare.16419522

Terreneuvian bio- and chemostratigraphy of the South Sichuan Region (South China)

2021 ◽  
pp. jgs2020-167
Author(s):  
Ben Yang ◽  
Michael Steiner
Keyword(s):  
Carbon Isotope ◽  
South China ◽  
Cambrian Explosion ◽  
The South ◽  
Yangtze Craton ◽  
Content Type ◽  
Link Type ◽  
Small Shelly Fossils ◽  
Assemblage Zone ◽  
Supplementary Material

Classical sections, such as the Maidiping and Daqiao Mine sections of South Sichuan (China), expose early Cambrian deposits that are crucial for understanding the biological and environmental evolution of Yangtze Craton. These sequences are rich in Terreneuvian small shelly fossils, which can be assigned to assemblages I and III from South China. The Anabarites trisulcatus– Protohertzina anabarica Assemblage Zone (Assemblage I) is recognized at the lower Maidiping Formation. The second assemblage (Paragloborilus subglobosus – Purella squamulosa Assemblage Zone) cannot be verified in South Sichuan, although previous reports claimed its existence based on the occurrence of Paragloborilus subglobosus. The third assemblage (Watsonella crosbyi Assemblage Zone) is confirmed in the upper Maidiping Formation. The abundant bioclasts in this interval indicate abrasions and bioerosions by winnowing or starved sedimentation. Carbon isotope values from the Maidiping section present no negative excursion at the presumed Ediacaran–Cambrian transition. A positive carbon isotope excursion is observed in the upper Maidiping Formation (Assemblage III) which is correlated to the ZHUCE excursion in the Dahai Member of eastern Yunnan. The shallow water deposits of South Sichuan can be correlated with the South China, western Mongolia and Siberia successions based on biozonations and carbon isotope trends.Thematic collection: This article is part of the Advances in the Cambrian Explosion collection available at: https://www.lyellcollection.org/cc/advances-cambrian-explosionSupplementary material:https://doi.org/10.6084/m9.figshare.c.5326834

Spatial heterogeneity of redox-sensitive trace metal enrichments in upper Ediacaran anoxic black shales

2021 ◽  
pp. jgs2020-234
Author(s):  
Chengsheng Jin ◽  
Chao Li ◽  
Thomas J. Algeo ◽  
Guochang Wang ◽  
Wei Shi ◽  
...  
Keyword(s):  
Spatial Heterogeneity ◽  
Water Mass ◽  
Significant Degree ◽  
Black Shales ◽  
Redox Conditions ◽  
Cambrian Explosion ◽  
Content Type ◽  
Oxygen Levels ◽  
Link Type ◽  
Supplementary Material

The Ediacaran radiation of metazoans is widely thought to have been triggered by an increase in atmospheric and oceanic oxygen levels. Although supported by other proxies, rising oxygen levels were deduced to a significant degree from sedimentary enrichments of redox-sensitive trace elements (RSTEs). However, some organic-rich shales of this period show only minor enrichments in RSTEs, leaving the significance of RSTE data for palaeo-oxygenation interpretations in doubt. We measured and compiled proxies for marine redox conditions (Fe species, RSTEs), total organic carbon (TOC) and water mass restriction (Mo/TOC and Co × Mn v. Cd/Mo) in the intra-shelf Jiulongwan and basinal Sandu sections of the Nanhua Basin in South China. Compared with the same proxies from coeval sections in the Nanhua Basin and globally, our results document a strong spatial heterogeneity of RSTE enrichments in anoxic black shales during the late Ediacaran. We infer that RSTE enrichments were strongly influenced by local factors, such as basinal restriction, seawater RSTE concentrations, and differential elemental responses to redox conditions and other influences. The broader significance of our findings is that they highlight the difficulty of investigating global redox conditions based on an analysis of local RSTE proxies within a single depositional basin or a limited number of study sections.Thematic collection: This article is part of the Advances in the Cambrian Explosion collection available at: https://www.lyellcollection.org/cc/advances-cambrian-explosionSupplementary material: Tables S1–S3 are available at https://doi.org/10.6084/m9.figshare.c.5325047

scholarly journals Tabelliscolex (Cricocosmiidae: Palaeoscolecidomorpha) from the early Cambrian Chengjiang Biota, and the evolution of seriation in Ecdysozoa

2021 ◽  
pp. jgs2021-060
Author(s):  
Xiaomei Shi ◽  
Richard J. Howard ◽  
Gregory D. Edgecombe ◽  
Xianguang Hou ◽  
Xiaoya Ma
Keyword(s):  
Phylogenetic Analyses ◽  
Sensu Stricto ◽  
Cambrian Explosion ◽  
Early Cambrian ◽  
Content Type ◽  
Link Type ◽  
Stem Group ◽  
New Material ◽  
Supplementary Material ◽  
Chengjiang Biota

Cricocosmiidae is a clade of palaeoscolecid-like worms from the Chengjiang Biota, China (Cambrian Stage 3). In contrast to palaeoscolecids sensu stricto, which exhibit tessellating micro-plate trunk ornamentation, cricocosmiids possess larger, serially repeated sets of trunk sclerites bearing resemblance to lobopodian trunk sclerites (e.g., Microdictyon spp.). Cricocosmiidae were therefore proposed as stem-group Panarthropoda in some studies but are recovered as stem-group Priapulida in most phylogenetic analyses. The affinity of cricoscosmiids within Ecdysozoa is therefore of much interest, as is testing the homology of these seriated structures. We report four new specimens of the rare cricocosmiid Tabelliscolex hexagonus, yielding new details of the ventral trunk projections, sclerites and proboscis. New data confirm T. hexagonus possessed paired ventral trunk projections in a consistent seriated pattern, which is also reported from new material of Cricocosmia jinningensis (Cricocosmiidae) and Mafangscolex yunnanensis (Palaeoscolecida sensu stricto). Even when the seriated sclerites and ventral projections of cricocosmiids are coded as homologous with the seriated trunk sclerites and paired appendages, respectively, of lobopodian panarthropods, our tree searches indicate they are convergent. Cricocosmiidae is nested within a monophyletic “Palaeoscolecida sensu lato” clade (Palaeoscolecidomorpha nov.) in stem-group Priapulida. Our study indicates that morphological seriation has independent origins in Scalidophora and Panarthropoda.Thematic collection: This article is part of the Advances in the Cambrian Explosion collection available at: https://www.lyellcollection.org/cc/advances-cambrian-explosionSupplementary material:https://doi.org/10.6084/m9.figshare.c.5551565

Fuxianhuiids are mandibulates and share affinities with total-group Myriapoda

2021 ◽  
pp. jgs2020-246 ◽  
Author(s):  
Cédric Aria ◽  
Fangchen Zhao ◽  
Maoyan Zhu
Keyword(s):  
Phylogenetic Analysis ◽  
Sister Group ◽  
Cambrian Explosion ◽  
Content Type ◽  
Total Group ◽  
Link Type ◽  
Supplementary Material ◽  
Ecological Success ◽  
Chengjiang Biota ◽  
Additional Support

In spite of their unrivalled ecological success, the origins of terrestrial mandibulates have long remained virtually unknown. In recent years, claims have been made based on phylogenetic results that fuxianhuiids, iconic fossils of the Chengjiang biota and purported basal euarthropods, were in fact mandibulates, allied with the problematic euthycarcinoids as the closest sister-group to Mandibulata or even stem myriapods. A re-examination of euthycarcinoid mouthparts has since brought additional support to this view. Here, we reinvestigated the anterior anatomy of the Cambrian euarthropod Fuxianhuia and its relatives. We demonstrate that the fuxianhuiid head is that of a mandibulate, sharing similarities with hymenocarines, including a limbless intercalary segment. The hypostome is a sub-triangular sclerite partially fused but anatomically independent from a large, bilobed labral plate, as observed in many extant mandibulate taxa as well as euthycarcinoids. The so-called ‘specialized post-antenn(ular) appendages' are therefore the mandibles, with a tripartite palp and large dented gnathal lobe partially covered by the hypostome-labrum complex. Under a ‘deep split' phylogenetic scenario, Fuxianhuia and its relatives are here resolved as sister-group to crown Mandibulata.Thematic collection: This article is part of the Advances in the Cambrian Explosion collection available at: https://www.lyellcollection.org/cc/advances-cambrian-explosionSupplementary material: Additional remarks on terminology, morphological interpretations and a list of modified/new characters used for the phylogenetic analysis are available at https://doi.org/10.6084/m9.figshare.c.5305042

scholarly journals PathScore: a web tool for identifying altered pathways in cancer data

2016 ◽  
Author(s):  
Stephen G. Gaffney ◽  
Jeffrey P. Townsend
Keyword(s):  
Web Application ◽  
Somatic Mutations ◽  
Supplementary Information ◽  
Web Tool ◽  
Cancer Data ◽  
Link Type ◽  
Novel Approach ◽  
Supplementary Material ◽  
User Friendly ◽  
Pathway Effect

ABSTRACTSummaryPathScore quantifies the level of enrichment of somatic mutations within curated pathways, applying a novel approach that identifies pathways enriched across patients. The application provides several user-friendly, interactive graphic interfaces for data exploration, including tools for comparing pathway effect sizes, significance, gene-set overlap and enrichment differences between projects.Availability and ImplementationWeb application available at pathscore.publichealth.yale.edu. Site implemented in Python and MySQL, with all major browsers supported. Source code available at github.com/sggaffney/pathscore with a GPLv3 [email protected] InformationAdditional documentation can be found at http://pathscore.publichealth.yale.edu/faq.

scholarly journals Long inverted repeats around the chromosome replication terminus in the model strain Bacillus thuringiensis serovar israelensis BGSC 4Q7

2020 ◽  
Vol 6 (12) ◽  
Author(s):  
Alexander Bolotin ◽  
Benoit Quinquis ◽  
Hugo Roume ◽  
Michel Gohar ◽  
Didier Lereclus ◽  
...  
Keyword(s):  
Bacillus Thuringiensis ◽  
Type Species ◽  
Single Nucleotide Variants ◽  
Host Chromosome ◽  
Content Type ◽  
Link Type ◽  
Significant Difference ◽  
Extrachromosomal Element ◽  
Genome Restructuring ◽  
Replication Terminus

Bacillus thuringiensis serovar israelensis is the most widely used natural biopesticide against mosquito larvae worldwide. Its lineage has been actively studied and a plasmid-free strain, B . thuringiensis serovar israelensis BGSC 4Q7 (4Q7), has been produced. Previous sequencing of the genome of this strain has revealed the persistent presence of a 235 kb extrachromosomal element, pBtic235, which has been shown to be an inducible prophage, although three putative chromosomal prophages have been lost. Moreover, a 492 kb region, potentially including the standard replication terminus, has also been deleted in the 4Q7 strain, indicating an absence of essential genes in this area. We reanalysed the genome coverage distribution of reads for the previously sequenced variant strain, and sequenced two independently maintained samples of the 4Q7 strain. A 553 kb area, close to the 492 kb deletion, was found to be duplicated. This duplication presumably restored the equal sizes of the replichores, and a balanced functioning of replication termination. An analysis of genome assembly graphs revealed a transient association of the host chromosome with the pBtic235 element. This association may play a functional role in the replication of the bacterial chromosome, and the termination of this process in particular. The genome-restructuring events detected may modify the genetic status of cytotoxic or haemolytic toxins, potentially influencing strain virulence. Twelve of the single-nucleotide variants identified in 4Q7 were probably due to the procedure used for strain construction or were present in the precursor of this strain. No sequence variants were found in pBtic235, but the distribution of the corresponding 4Q7 reads indicates a significant difference from counterparts in natural B. thuringiensis serovar israelensis strains, suggesting a duplication or over-replication in 4Q7. Thus, the 4Q7 strain is not a pure plasmid-less offshoot, but a highly genetically modified derivative of its natural ancestor. In addition to potentially influencing virulence, genome-restructuring events can modify the replication termination machinery. These findings have potential implications for the conclusions of virulence studies on 4Q7 as a model, but they also raise interesting fundamental questions about the functioning of the Bacillus genome.

scholarly journals Brachiopod-dominated communities and depositional environment of the Guanshan Konservat-Lagerstätte, eastern Yunnan, China

2020 ◽  
Vol 178 (1) ◽  
pp. jgs2020-043 ◽  
Author(s):  
Feiyang Chen ◽  
Glenn A. Brock ◽  
Zhiliang Zhang ◽  
Brittany Laing ◽  
Xinyi Ren ◽  
...  
Keyword(s):  
Depositional Environment ◽  
Sedimentary Environment ◽  
Low Energy ◽  
Cambrian Explosion ◽  
Early Cambrian ◽  
Tissue Preservation ◽  
Content Type ◽  
Guanshan Biota ◽  
Supplementary Material ◽  
Later Phase

The Guanshan Biota is an unusual early Cambrian Konservat-Lagerstätte from China and is distinguished from all other exceptionally preserved Cambrian biotas by the dominance of brachiopods and a relatively shallow depositional environment. However, the faunal composition, overturn and sedimentology associated with the Guanshan Biota are poorly understood. This study, based on collections through the best-exposed succession of the basal Wulongqing Formation at the Shijiangjun section, Wuding County, eastern Yunnan, China recovered six major animal groups with soft tissue preservation; brachiopods vastly outnumbered all other groups. Brachiopods quickly replace arthropods as the dominant fauna following a transgression at the base of the Wulongqing Formation. A transition from a botsfordiid-, eoobolid- and acrotretid- to an acrotheloid-dominated brachiopod assemblage occurs up-section. Four episodically repeated lithofacies reveal a relatively low-energy, offshore to lower shoreface sedimentary environment at the Shijiangjun section, which is very different from the Wulongqing Formation in the Malong and Kunming areas. Multiple event flows and rapid obrution are responsible for faunal overturn and fluctuation through the section. A detailed lithofacies and palaeontological investigation of this section provides a better understanding of the processes and drivers of faunal overturn during the later phase of the Cambrian Explosion.Supplementary material: Composition and comparison of the Malong Fauna and the Guanshan Biota is are available at: https://doi.org/10.6084/m9.figshare.c.5080799

scholarly journals Environmental variability in response to abrupt climatic change during the Last Glacial–Interglacial Transition (16–8 cal ka BP): evidence from Mainland, Orkney

2019 ◽  
Vol 56 (1) ◽  
pp. 30-46 ◽  
Author(s):  
Ashley M. Abrook ◽  
Ian P. Matthews ◽  
Alice M. Milner ◽  
Ian Candy ◽  
Adrian P. Palmer ◽  
...  
Keyword(s):  
Early Career ◽  
Early Holocene ◽  
Content Type ◽  
Last Glacial ◽  
Principal Curve ◽  
Link Type ◽  
Supplementary Material ◽  
Career Research ◽  
The Last Glacial ◽  
Millennial Scale

The Last Glacial–Interglacial Transition (LGIT) is a period of climatic complexity where millennial-scale climatic reorganization led to changes in ecosystems. Alongside millennial-scale changes, centennial-scale climatic events have been observed within records from Greenland and continental Europe. The effects of these abrupt events on landscapes and environments are difficult to discern at present. This, in part, relates to low temporal resolutions attained by many studies and the sensitivity of palaeoenvironmental proxies to abrupt change. We present a high-resolution palynological and charcoal study of Quoyloo Meadow, Orkney and use the Principal Curve statistical method to assist in revealing biostratigraphic change. The LGIT vegetation succession on Orkney is presented as open grassland and Empetrum heath during the Windermere Interstadial and early Holocene, and open grassland with Artemisia during the Loch Lomond Stadial. However, a further three phases of ecological change, characterized by expansions of open ground flora, are dated to 14.05–13.63, 10.94–10.8 and 10.2 cal ka BP. The timing of these changes is constrained by cryptotephra of known age. The paper concludes by comparing Quoyloo Meadow with Crudale Meadow, Orkney, and suggests that both Windermere Interstadial records are incomplete and that fire is an important landscape control during the early Holocene.Supplementary material: All raw data associated with this publication: raw pollen counts, charcoal data, Principal Curve and Rate of Change outputs and the age-model output are available at https://doi.org/10.6084/m9.figshare.c.4725269Thematic collection: This article is part of the ‘Early Career Research’ available at: https://www.lyellcollection.org/cc/SJG-early-career-research

scholarly journals The naming of the Permian System

2021 ◽  
pp. jgs2021-037
Author(s):  
Michael J. Benton ◽  
Andrey G. Sennikov
Keyword(s):  
System Level ◽  
Naming Time ◽  
Content Type ◽  
Red Sandstone ◽  
Link Type ◽  
Permian System ◽  
Urgent Task ◽  
Great Leader ◽  
Supplementary Material ◽  
Access To Documents

The naming of the Permian by Roderick Murchison in 1841 is well known. This is partly because he ‘completed’ the stratigraphic column at system level, but also because of the exotic aspects of his extended fieldwork in remote parts of Russia and Murchison's reputed character. Here, we explore several debated and controversial aspects of this act, benefiting from access to documents and reports notably from Russian sources. Murchison or Sedgwick could have provided a name for the unnamed lower New Red Sandstone in 1835 based on British successions or those in Germany, so perhaps the Imperial aim of naming time from British geology was not the urgent task some have assumed. Murchison has been painted as arrogant and Imperialistic, which was doubtless true, but at the time many saw him as a great leader, even an attractive individual. Others suggest he succeeded because he stood on the shoulders of local geologists; however, his abilities at brilliant and rapid geological synthesis are undoubted. Two unexpected consequences of his work are that this arch conservative is revered in Russia as a hero of geological endeavours, and, for all his bombast, his ‘Permian’ was not widely accepted until 100 years after its naming.Supplementary material:https://doi.org/10.6084/m9.figshare.c.5412079

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