Towards systolic hardware acceleration for local complexity analysis of massive genomic data

Author(s):  
Agathoklis Papadopoulos ◽  
Vasilis J. Promponas ◽  
Theocharis Theocharides
Integration ◽  
2013 ◽  
Vol 46 (3) ◽  
pp. 230-239 ◽  
Author(s):  
Agathoklis Papadopoulos ◽  
Ioannis Kirmitzoglou ◽  
Vasilis J. Promponas ◽  
Theocharis Theocharides

IEEE Micro ◽  
2021 ◽  
pp. 1-1
Author(s):  
Tae Jun Ham ◽  
David Bruns-Smith ◽  
Brendan Sweeney ◽  
Yejin Lee ◽  
Seong Hoon Seo ◽  
...  

2013 ◽  
Vol 133 (2) ◽  
pp. 132-138
Author(s):  
Shuhei Isa ◽  
Chikatoshi Yamada ◽  
Yasunori Nagata

Author(s):  
Jiyang Yu ◽  
Dan Huang ◽  
Siyang Zhao ◽  
Nan Pei ◽  
Huixia Cheng ◽  
...  

Author(s):  
Pawan Kumar Jayaswal ◽  
Asheesh Shanker ◽  
Nagendra Kumar Singh

Actin and tubulin are cytoskeleton proteins, which are important components of the celland are conserved across species. Despite their crucial significance in cell motility and cell division the distribution and phylogeny of actin and tubulin genes across taxa is poorly understood. Here we used publicly available genomic data of 49 model species of plants, animals, fungi and Protista for further understanding the distribution of these genes among diverse eukaryotic species using rice as reference. The highest numbers of rice actin and tubulin gene homologs were present in plants followed by animals, fungi and Protista species, whereas ten actin and nine tubulin genes were conserved in all 49 species. Phylogenetic analysis of 19 actin and 18 tubulin genes clustered them into four major groups each. One each of the actin and tubulin gene clusters was conserved across eukaryotic species. Species trees based on the conserved actin and tubulin genes showed evolutionary relationship of 49 different taxa clustered into plants, animals, fungi and Protista. This study provides a phylogenetic insight into the evolution of actin and tubulin genes in diverse eukaryotic species.


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