Abstract 3011: Evaluation of a high throughput platform for chromatin immunoprecipitation

2011 ◽  
Author(s):  
Zirong Li
Keyword(s):  
High Throughput ◽  
Chromatin Immunoprecipitation

scholarly journals Fully automated high-throughput chromatin immunoprecipitation for ChIP-seq: Identifying ChIP-quality p300 monoclonal antibodies

2014 ◽  
Vol 4 (1) ◽  
Author(s):  
William C. Gasper ◽  
Georgi K. Marinov ◽  
Florencia Pauli-Behn ◽  
Max T. Scott ◽  
Kimberly Newberry ◽  
...  
Keyword(s):  
Monoclonal Antibodies ◽  
High Throughput ◽  
Chromatin Immunoprecipitation ◽  
Chip Quality

scholarly journals High throughput automated chromatin immunoprecipitation as a platform for drug screening and antibody validation

Lab on a Chip ◽  
2012 ◽  
Vol 12 (12) ◽  
pp. 2190 ◽  
Author(s):  
Angela R. Wu ◽  
Tiara L.A. Kawahara ◽  
Nicole A. Rapicavoli ◽  
Jan van Riggelen ◽  
Emelyn H. Shroff ◽  
...  
Keyword(s):  
High Throughput ◽  
Drug Screening ◽  
Chromatin Immunoprecipitation ◽  
Antibody Validation

scholarly journals A High-Throughput Chromatin Immunoprecipitation Approach Reveals Principles of Dynamic Gene Regulation in Mammals

2012 ◽  
Vol 47 (5) ◽  
pp. 810-822 ◽  
Author(s):  
Manuel Garber ◽  
Nir Yosef ◽  
Alon Goren ◽  
Raktima Raychowdhury ◽  
Anne Thielke ◽  
...  
Keyword(s):  
Gene Regulation ◽  
High Throughput ◽  
Chromatin Immunoprecipitation

scholarly journals DIVERSITY in binding, regulation, and evolution revealed from high-throughput ChIP

2017 ◽  
Author(s):  
Sneha Mitra ◽  
Anushua Biswas ◽  
Leelavati Narlikar
Keyword(s):  
High Throughput ◽  
Dna Sequences ◽  
Chromatin Immunoprecipitation ◽  
Direct Contact ◽  
Black Box ◽  
Cross Linking ◽  
Link Type ◽  
Chip Experiment ◽  
Long Range Interactions ◽  
Regulatory Functions

AbstractA high-throughput chromatin immunoprecipitation (ChIP) experiment is like a black-box: it reports all regions that are associated with the profiled protein based on the initial cross-linking step. These regions can be a highly diverse set of DNA sequences, with some making direct contact with the protein, some binding through intermediaries, and some being a result of long-range interactions involving the protein. We present diversity, a method that identifies the distinct components of such a mixture, leaving no data behind, while at the same time, using no prior motif knowledge. Using the example of the REST protein, we show that these different components give insights into the various complexes that may be forming along the chromatin and their regulatory functions.http://diversity.ncl.res.in/ (webserver)https://github.com/NarlikarLab/DIVERSITY (standalone for Mac OSX/Linux)

scholarly journals Optimization of experimental design parameters for high-throughput chromatin immunoprecipitation studies

2008 ◽  
Vol 36 (21) ◽  
pp. e144-e144 ◽  
Author(s):  
Romina Ponzielli ◽  
Paul C. Boutros ◽  
Sigal Katz ◽  
Angelina Stojanova ◽  
Adam P. Hanley ◽  
...  
Keyword(s):  
Experimental Design ◽  
High Throughput ◽  
Chromatin Immunoprecipitation ◽  
Design Parameters
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