Virtual Endoscopy: Application of 3D Visualization to Medical Diagnosis

1997 ◽  
Vol 6 (2) ◽  
pp. 179-197 ◽  
Author(s):  
Richard M. Satava ◽  
Richard A. Robb

Virtual endoscopy is a diagnostic technique in which a three-dimensional imaging technology (CT scan, MRI scan, ultrasound) is used to create a computer-generated representation of a specific patient's anatomy or organ, and then the virtual organ is “flown through,” giving the same visual impression and image as if the corresponding real organ had a video or fiberoptic endoscopic procedure performed. The potential is to provide a computer diagnosis to replace an endoscopic procedure, not only for conventional endoscopy such as bronchoscopy, colonoscopy, sinusoscopy, or hysteroscopy, but also for areas where traditional endoscopy is not possible, such as the inner ear, spleen, lymphatic tissues. With sophisticated signal processing and computational analysis, it may be possible in the future to perform a “numerical biopsy,” that is, make a tissue diagnosis based upon spectral or other information contained in the images.

Author(s):  
Peter Demian ◽  
Kirti Ruikar ◽  
Tarun Sahu ◽  
Anne Morris

An increasing amount of information is packed into BIMs, with the 3D geometry serving as a central index leading to other information. The 3DIR project investigates information retrieval from such environments. Here, the 3D visualization can be exploited when formulating queries, computing the relevance of information items, or visualizing search results. The need for such a system was specified using workshops with end users. A prototype was built on a commercial BIM platform. Following an evaluation, the system was enhanced to exploit model topology. Relationships between 3D objects are used to widen the search, whereby relevant information items linked to a related 3D object (rather than linked directly to objects selected by the user) are still retrieved but ranked lower. An evaluation of the enhanced prototype demonstrates its effectiveness but highlights its added complexity. Care needs to be taken when exploiting topological relationships, but that a tight coupling between text-based retrieval and the 3D model is generally effective in information retrieval from BIMs.


2016 ◽  
Vol 5 (1) ◽  
pp. 67-78 ◽  
Author(s):  
Peter Demian ◽  
Kirti Ruikar ◽  
Tarun Sahu ◽  
Anne Morris

An increasing amount of information is packed into BIMs, with the 3D geometry serving as a central index leading to other information. The 3DIR project investigates information retrieval from such environments. Here, the 3D visualization can be exploited when formulating queries, computing the relevance of information items, or visualizing search results. The need for such a system was specified using workshops with end users. A prototype was built on a commercial BIM platform. Following an evaluation, the system was enhanced to exploit model topology. Relationships between 3D objects are used to widen the search, whereby relevant information items linked to a related 3D object (rather than linked directly to objects selected by the user) are still retrieved but ranked lower. An evaluation of the enhanced prototype demonstrates its effectiveness but highlights its added complexity. Care needs to be taken when exploiting topological relationships, but that a tight coupling between text-based retrieval and the 3D model is generally effective in information retrieval from BIMs.


2005 ◽  
Vol 53 (2) ◽  
pp. 85
Author(s):  
Su Yeon Kim ◽  
Sun Seob Choi ◽  
Myung Jin Kang ◽  
Tae Beom Shin ◽  
Ki Nam Lee ◽  
...  

2016 ◽  
Vol 136 (3) ◽  
pp. 318-324
Author(s):  
Naoya Miyamoto ◽  
Makoto Koizumi ◽  
Hiroshi Miyao ◽  
Takayuki Kobayashi ◽  
Kojiro Aoki

2021 ◽  
Vol 7 (1) ◽  
pp. 540-555
Author(s):  
Hayley L. Mickleburgh ◽  
Liv Nilsson Stutz ◽  
Harry Fokkens

Abstract The reconstruction of past mortuary rituals and practices increasingly incorporates analysis of the taphonomic history of the grave and buried body, using the framework provided by archaeothanatology. Archaeothanatological analysis relies on interpretation of the three-dimensional (3D) relationship of bones within the grave and traditionally depends on elaborate written descriptions and two-dimensional (2D) images of the remains during excavation to capture this spatial information. With the rapid development of inexpensive 3D tools, digital replicas (3D models) are now commonly available to preserve 3D information on human burials during excavation. A procedure developed using a test case to enhance archaeothanatological analysis and improve post-excavation analysis of human burials is described. Beyond preservation of static spatial information, 3D visualization techniques can be used in archaeothanatology to reconstruct the spatial displacement of bones over time, from deposition of the body to excavation of the skeletonized remains. The purpose of the procedure is to produce 3D simulations to visualize and test archaeothanatological hypotheses, thereby augmenting traditional archaeothanatological analysis. We illustrate our approach with the reconstruction of mortuary practices and burial taphonomy of a Bell Beaker burial from the site of Oostwoud-Tuithoorn, West-Frisia, the Netherlands. This case study was selected as the test case because of its relatively complete context information. The test case shows the potential for application of the procedure to older 2D field documentation, even when the amount and detail of documentation is less than ideal.


2000 ◽  
Vol 6 (S2) ◽  
pp. 282-283
Author(s):  
Matthew Dougherty ◽  
Wah Chiu

Sophisticated tools are needed to examine the results of cyro-microscopy. As the size and resolution of three dimensional macromolecular structures steadily improve, and the speed at with which they can be generated increases, researchers are finding they are inundated with larger datasets and at the same time are compelled to expediently evaluate these structures in unforeseen ways. Integration of EM data with other types of information is becoming necessary and routine; for example X-ray data, 3D EM reconstructions, and theoretical models, must be evaluated in concert to discount or propose hypothesis. To create such tools, the developer must take into account not only the empirical and theoretical possibilities, but also they must master the human factors and computational limits. During the last five years, the National Center for Macromolecular Imaging (NCMI) has progressed from a remedial 3D visualization capability to a collection of visualization tools allowing researchers to focus on the discovery phase of biological research.


2013 ◽  
Vol 19 (2) ◽  
pp. 021102 ◽  
Author(s):  
Shang Wang ◽  
Chih-Hao Liu ◽  
Valery P. Zakharov ◽  
Alexander J. Lazar ◽  
Raphael E. Pollock ◽  
...  

2020 ◽  
Vol 41 (Supplement_2) ◽  
Author(s):  
T Fujiwara ◽  
N Takeda ◽  
M Hatano ◽  
S Nishimura ◽  
I Komuro

Abstract Background Pulmonary hypertension (PH) is characterized by increased pulmonary vascular resistance and right heart failure with progressive narrowing or occlusion of the pulmonary artery. However, the assessment of vascular remodeling is mostly limited to averaged increases in wall thickening, and even the role of vascular endothelial growth factor (VEGF), remains incompletely understood; Although abundantly expressed VEGF is expected to elicit angio-obliteration and the knockout of hypoxia inducible factor (HIF) prevents PH in mice, VEGF inhibitor Sugen exacerbates hypoxia (Hx)-induced PH model, which is referred to as VEGF paradox. Purpose To analyze three-dimensional (3D) spatiotemporal changes of pulmonary microstructure and function, which reflect the disease activity and lead to resolve the paradox. Methods and results We developed a novel 3D visualization system of microstructural networks in whole mouse organ with single-cell resolution, using combined tissue clearing technique called CUBIC and multiphoton excitation microscope. The system enabled the simultaneous 3D evaluation of microvascular structure, invaded macrophages and fibrosis with effective penetration of several mm (whole organ). Three-dimensional observations of PH mice models including Hx, Sugen/Hx, and human-like Alk1+/− hereditary PH models, revealed that not only inward (negative) microvessel remodeling with stenosis, but also marked elongation of microvascular ECs, was evident except Sugen/Hx model at the early phase, which had not been detected by 2D histological sections. Comparable transcriptome analysis revealed that PGC1α, which regulates HIF-independent VEGF expression and angiogenesis, plays an important role in the characteristic response for mitochondrial and microvascular maintenance. PGC1α was up-regulated in the early phage in Hx and Alk1+/− PH models with microvascular angiogenetic change, whereas Sugen/Hx-model did not increase PGC1α expression and did not show microvascular remodeling. Furthermore pulmonary ECs-specific PGC1α-deficient mice exacerbated Hx-PH model with decreased VEGF expression and microvessel density, and administration of Baicalin, a flavonoid enhancing PGC1α expression, ameliorated Hx-PH model with increased VEGF expression. Conclusions The 3D visualization system disclosed an unexpected change of angiogenic microvascular structure in the early phage of PH, which is regulated by EC PGC1α. Microvascular angiogenesis which is induced by up-regulation in PGC1α -VEGF pathway is a crucial factor for compensation of PH in the early phase, which provides a potential novel therapeutic target for PH. Figure 1 Funding Acknowledgement Type of funding source: Public grant(s) – National budget only. Main funding source(s): JSJP


Author(s):  
Maria E. Currie ◽  
Ana Luisa Trejos ◽  
Reiza Rayman ◽  
Michael W.A. Chu ◽  
Rajni Patel ◽  
...  

Objective The purpose of this study was to determine the effect of three-dimensional (3D) binocular, stereoscopic, and two-dimensional (2D) monocular visualization on robotics-assisted mitral valve annuloplasty versus conventional techniques in an ex vivo animal model. In addition, we sought to determine whether these effects were consistent between novices and experts in robotics-assisted cardiac surgery. Methods A cardiac surgery test-bed was constructed to measure forces applied during mitral valve annuloplasty. Sutures were passed through the porcine mitral valve annulus by the participants with different levels of experience in robotics-assisted surgery and tied in place using both robotics-assisted and conventional surgery techniques. Results The mean time for both the experts and the novices using 3D visualization was significantly less than that required using 2D vision (P < 0.001). However, there was no significant difference in the maximum force applied by the novices to the mitral valve during suturing (P = 0.7) and suture tying (P = 0.6) using either 2D or 3D visualization. The mean time required and forces applied by both the experts and the novices were significantly less using the conventional surgical technique than when using the robotic system with either 2D or 3D vision (P < 0.001). Conclusions Despite high-quality binocular images, both the experts and the novices applied significantly more force to the cardiac tissue during 3D robotics-assisted mitral valve annuloplasty than during conventional open mitral valve annuloplasty. This finding suggests that 3D visualization does not fully compensate for the absence of haptic feedback in robotics-assisted cardiac surgery.


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