Fe isotope fractionation between inorganic aqueous Fe(III) and a Fe siderophore complex

2008 ◽  
Vol 72 (1) ◽  
pp. 313-316 ◽  
Author(s):  
K. Dideriksen ◽  
J. A. Baker ◽  
S. L. S. Stipp

AbstractIn oxic waters, dissolved Fe exists dominantly as Fe(III) complexes with strongly coordinating, siderophore-like ligands. In this study, we have determined an equilibrium Fe isotope fractionation of 0.6% (∆56Fe) between inorganic Fe(III) and Fe(III) siderophore complexes using the siderophore desferrioxamine B as a model compound. The 57Fe tracer experiments show that the Fe isotopes ofthe siderophores exchange readily with dissolved inorganic Fe. The results indicate that organic ligands are likely to be important in the generation ofFe isotope signatures in oxic environments. For example, the isotopic composition ofmarine Fe-Mn nodules may largely be due to the presence of strongly coordinating ligands.

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Elaheh Lotfi-Kalahroodi ◽  
Anne-Catherine Pierson-Wickmann ◽  
Olivier Rouxel ◽  
Rémi Marsac ◽  
Martine Bouhnik-Le Coz ◽  
...  

AbstractAlthough redox reactions are recognized to fractionate iron (Fe) isotopes, the dominant mechanisms controlling the Fe isotope fractionation and notably the role of organic matter (OM) are still debated. Here, we demonstrate how binding to organic ligands governs Fe isotope fractionation beyond that arising from redox reactions. The reductive biodissolution of soil Fe(III) enriched the solution in light Fe isotopes, whereas, with the extended reduction, the preferential binding of heavy Fe isotopes to large biological organic ligands enriched the solution in heavy Fe isotopes. Under oxic conditions, the aggregation/sedimentation of Fe(III) nano-oxides with OM resulted in an initial enrichment of the solution in light Fe isotopes. However, heavy Fe isotopes progressively dominate the solution composition in response to their binding with large biologically-derived organic ligands. Confronted with field data, these results demonstrate that Fe isotope systematics in wetlands are controlled by the OM flux, masking Fe isotope fractionation arising from redox reactions. This work sheds light on an overseen aspect of Fe isotopic fractionation and calls for a reevaluation of the parameters controlling the Fe isotopes fractionation to clarify the interpretation of the Fe isotopic signature.


2020 ◽  
Author(s):  
Jonathan Gropp ◽  
Mark Iron ◽  
Itay Halevy

Microbial production and consumption of methane are widespread in natural and artificial environments, with important economic and climatic implications. Attempts to use the isotopic composition of methane to constrain its sources are complicated by incomplete understanding of the mechanisms of variation in methane's isotopic composition. Knowledge of the equilibrium isotope fractionations among the large organic intracellular intermediates in the microbial pathways of methane production and consumption must form the basis of any exploration of the mechanisms of isotopic variation, but estimates of these equilibrium isotope fractionations are currently unavailable. To address this gap, we calculated the equilibrium isotopic fractionation of carbon (<sup>13</sup>C/<sup>12</sup>C) and hydrogen (D/H) isotopes among compounds in anaerobic methane metabolisms, as well as the abundance of multiple isotope substitutions ("clumping," e.g., <sup>13</sup>C--D) in these compounds. The Density Functional Theory calculations employed the M06-L/def2-TZVP level of theory and the SMD implicit solvation model, which we have recently optimized for large organic molecules and tested against measured equilibrium isotope fractionations. The computed <sup>13</sup>beta and <sup>2</sup>beta values decrease with decreasing average oxidation state of the carbon atom in the molecules, resulting in a preference for enrichment of the molecules with more oxidized carbon in <sup>13</sup>C and D. Using the computed $\beta$ values, we calculated the equilibrium isotope fractionation factors in the prominent methanogenesis pathways (hydrogenotrophic, methylotrophic and acetoclastic) and in the pathway for anaerobic oxidation of methane (AOM) over a temperature range of 0-700 degrees Celsius. Our calculated equilibrium fractionation factors compare favorably with experimental constrains, where available, and we used them to investigate the relation between the apparent isotope fractionation during methanogenesis and AOM and the thermodynamic drive for these reactions. We show that a detailed map of the equilibrium fractionation factors along these metabolic pathways allows an evaluation of the contribution of equilibrium and kinetic isotope effects to apparent isotope fractionations observed in laboratory, natural and artificial settings. The comprehensive set of equilibrium isotope fractionation factors calculated in this study provides a firm basis for future explorations of isotope effects in methane metabolism.


2021 ◽  
Author(s):  
Caroline Soderman ◽  
Oliver Shorttle ◽  
Simon Matthews ◽  
Helen Williams

The geochemistry of global mantle melts suggests that both mid-ocean ridge basalts (MORB) and ocean island basalts (OIB) sample lithological and temperature heterogeneities originating in both the upper and lower mantle. Recently, non-traditional stable isotopes have been suggested as a new tool to complement existing tracers of mantle heterogeneity (e.g., major and trace elements, radiogenic isotopes), because mineral- and redox-specific equilibrium stable isotope fractionation effects can link the stable isotope ratios of melts to their source mineralogy and melting degree. Here, we investigate five stable isotope systems (Mg-Ca-Fe-V-Cr) that have shown promise in models or natural samples as tracers of mantle temperature and/or lithological heterogeneity. We use a quantitative model, combining thermodynamically self-consistent mantle melting and equilibrium isotope fractionation models, to explore the behaviour of the isotope ratios of these elements during melting of three mantle lithologies (peridotite, and silica-excess and silica-deficient pyroxenites), responding to changes in mantle mineralogy, oxygen fugacity, temperature and pressure.We find that, given current analytical precision, the stable isotope systems examined here are not predicted to be sensitive to mantle potential temperature variations through equilibrium isotope fractionation processes. By contrast, source lithological heterogeneity is predicted to be detectable in some cases in the stable isotope ratios of erupted basalts, although generally only at proportions of > 10% MORB-like pyroxenite in the mantle source, given current analytical precision. Magnesium and Ca stable isotopes show most sensitivity to a garnet-bearing source lithology, and Fe and Cr stable isotopes are potentially sensitive to the presence of MORB-like pyroxenite in the mantle source, although the behaviour of Cr isotopes is comparatively under-constrained and requires further work to be applied with confidence to mantle melts. When comparing the magnitude and direction of predicted equilibrium isotopic fractionation of peridotite and pyroxenite melts to natural MORB and OIB data, we find that aspects of the natural data (including the mean Mg-Ca-Fe-V isotopic composition of MORB, the range of Mg-Ca isotopic compositions seen in MORB data, the mean Mg-Ca-Cr isotopic composition of OIB, and the range of Mg-V-Cr isotopic compositions in OIB data) can be matched by equilibrium isotope fractionation during partial melting of peridotite and pyroxenite sources -- with pyroxenite required even for some MORB data. However, even when considering analytical uncertainty on natural sample measurements, the range in stable isotope compositions seen across the global MORB and OIB datasets suggests that kinetic isotope fractionation, or processes modifying the isotopic composition of recycled crustal material such that it is distinct from MORB, may be required to explain all the natural data. We conclude that the five stable isotope systems considered here have potential to be powerful complementary tracers to other geochemical tracers of the source lithology of erupted basalts. However, continued improvements in analytical precision in conjunction with experimental and theoretical predictions of isotopic fractionation between mantle minerals and melts are required before these novel stable isotopes can be unambiguously used to understand source heterogeneity in erupted basalts.


2019 ◽  
Vol 67 (1) ◽  
pp. 49-58 ◽  
Author(s):  
Kerstin Hürkamp ◽  
Nadine Zentner ◽  
Anne Reckerth ◽  
Stefan Weishaupt ◽  
Karl-Friedrich Wetzel ◽  
...  

Abstract High amounts of precipitation are temporarily stored in high-alpine snow covers and play an important role for the hydrological balance. Stable isotopes of hydrogen (δ2H) and oxygen (δ18O) in water samples have been proven to be useful for tracing transport processes in snow and meltwater since their isotopic ratio alters due to fractionation. In 18 snow profiles of two snowfall seasons, the temporal and spatial variation of isotopic composition was analysed on Mt. Zugspitze. The δ18O and δ2H ranged between -26.7‰ to -9.3‰ and -193.4‰ to -62.5‰ in 2014/2015 and between -26.5‰ to -10.5‰ and -205.0‰ to -68.0‰ in 2015/2016, respectively. Depth-integrated samples of entire 10 cm layers and point measurements in the same layers showed comparable isotopic compositions. Isotopic composition of the snowpack at the same sampling time in spatially distributed snow profiles was isotopically more similar than that analysed at the same place at different times. Melting and refreezing were clearly identified as processes causing isotope fractionation in surficial, initial base or refrozen snow layers. For the future, a higher sampling frequency with detailed isotopic composition measurements during melt periods are recommended to improve the understanding of mass transport associated with snowmelt.


2021 ◽  
Author(s):  
Kazuma Oikawa ◽  
Hideko Takayanagi ◽  
Kazuyoshi Endo ◽  
Masa-aki Yoshida ◽  
Yasufumi Iryu

&lt;p&gt;Carbon (&amp;#948;&lt;sup&gt;13&lt;/sup&gt;C) and oxygen (&amp;#948;&lt;sup&gt;18&lt;/sup&gt;O) isotope composition of Rhynchonelliformea brachiopods (hereafter, called &amp;#8216;brachiopods&amp;#8217;) have been regarded as useful paleoenvironmental indicators throughout the Phanerozoic. However, recent studies have revealed that the isotopic composition in modern brachiopod shells records not only environmental changes in ambient seawater but also is influenced by biological controls such as the chemical/isotopic composition of calcifying fluids and physiological processes (e.g., growth rates, metabolism). The latter is known as biological isotope fractionation effects, such as kinetic, metabolic, and pH effects. Recently, a new calcification mechanism in brachiopod shell formation, ion transport mechanism, was proposed. In this study, we measured &amp;#948;&lt;sup&gt;13&lt;/sup&gt;C and &amp;#948;&lt;sup&gt;18&lt;/sup&gt;O values of the primary (PL) and secondary (SL) shell layers of three &lt;em&gt;Pictothyris picta&lt;/em&gt; (one male and two female specimens) collected at a water depth of~61 m off Okinoshima to improve our understanding of biological isotope fractionation effects during their shell secretion. We obtained ontogenetic-series &amp;#948;&lt;sup&gt;13&lt;/sup&gt;C and &amp;#948;&lt;sup&gt;18&lt;/sup&gt;O profiles from the PL (PL-Ont) and the uppermost SL (SL-Ont) at the sampling resolution of 3 days to 8 months per sample. We obtained inner-series &amp;#948;&lt;sup&gt;13&lt;/sup&gt;C and &amp;#948;&lt;sup&gt;18&lt;/sup&gt;O profiles from the innermost SL (SL-In) as well. The variations in the &amp;#948;&lt;sup&gt;13&lt;/sup&gt;C and &amp;#948;&lt;sup&gt;18&lt;/sup&gt;O profiles of the PL-Ont showed similar trends to those of the SL-Ont. However, the PL-Ont values mostly exhibited relatively lower &amp;#948;&lt;sup&gt;18&lt;/sup&gt;O values than those of the SL-Ont. Cross plots between the &amp;#948;&lt;sup&gt;13&lt;/sup&gt;C and &amp;#948;&lt;sup&gt;18&lt;/sup&gt;O values of the PL-Ont indicated a strong positive correlation and were lower than those of calcite precipitated in isotopic equilibrium with ambient seawater at the fast growth stage, suggesting the significant influence of the kinetic isotope fractionation effect. The SL was precipitated in oxygen isotopic equilibrium with ambient seawater regardless of the growth stage and/or the seasonal changes in living environments. Furthermore, the PL-Ont, SL-Ont, and SL-Inshowed similar &amp;#948;&lt;sup&gt;18&lt;/sup&gt;O values during the cold season, indicating negligible influences of the kinetic, pH, and magnesium effects on &amp;#948;&lt;sup&gt;18&lt;/sup&gt;O composition. The &amp;#948;&lt;sup&gt;13&lt;/sup&gt;C values of the PL-Ont formed at the cold season (= micro-portion formed under the least kinetic isotope fractionation effect) were lower than those of the SL, indicating the stronger metabolic effect on the PL secretion. Our isotopic data showed that the time lag of the PL and the SL formation varies among specimens.&lt;/p&gt;


2008 ◽  
Vol 8 (23) ◽  
pp. 7217-7238 ◽  
Author(s):  
B. W. Sinha ◽  
P. Hoppe ◽  
J. Huth ◽  
S. Foley ◽  
M. O. Andreae

Abstract. Sulfur isotope analysis of atmospheric aerosols is a well established tool for identifying sources of sulfur in the atmosphere, estimating emission factors, and tracing the spread of sulfur from anthropogenic sources through ecosystems. Conventional gas mass spectrometry averages the isotopic compositions of several different types of sulfur aerosol particles, and therefore masks the individual isotopic signatures. In contrast, the new single particle technique presented here determines the isotopic signature of the individual particles. Primary aerosol particles retain the original isotopic signature of their source. The isotopic composition of secondary sulfates depends on the isotopic composition of precursor SO2 and the oxidation process. The fractionation with respect to the source SO2 is poorly characterized. In the absence of conclusive laboratory experiments, we consider the kinetic fractionation of −9‰ during the gas phase oxidation of SO2 by OH as suggested by Saltzman et al. (1983) and Tanaka et al. (1994) to be the most reasonable estimate for the isotope fractionation during gas phase oxidation of SO2 (αhom=0.991) and the equilibrium fractionation for the uptake of SO2 (g) into the aqueous phase and the dissociation to HSO3- of +16.5‰ measured by Eriksen (1972a) to be the best approximation for the fractionation during oxidation in the aqueous phase (αhet=1.0165). The sulfur isotope ratio of secondary sulfate particles can therefore be used to identify the oxidation pathway by which this sulfate was formed. However, the fraction of heterogeneous and homogeneous oxidation pathway calculated is very sensitive to the isotope fractionation assumed for both pathways. With the new single particle technique, different types of primary and secondary sulfates were first identified based on their chemical composition, and then their individual isotopic signature was measured separately. Our samples were collected in Mainz, Germany, in an urban environment. Secondary sulfates (ammonium sulfate, gypsum, mixed sulfates) and coatings on silicates or organic aerosol dominated sulfate loadings in our samples. Comparison of the chemical and isotopic composition of secondary sulfates showed that the isotopic composition was homogeneous, independent of the chemical composition. This is typical for particles that derive from in-cloud processing. The isotopic composition of the source SO2 of secondary sulfates was calculated based on the isotopic composition of particles with known oxidation pathway and showed a strong dependence on wind direction. The contribution of heterogeneous oxidation to the formation of secondary sulfate was highly variable (35%–75%) on day-to-day basis and depended on meteorological conditions.


2014 ◽  
Vol 11 (19) ◽  
pp. 5493-5502 ◽  
Author(s):  
S. Emmanuel ◽  
J. A. Schuessler ◽  
J. Vinther ◽  
A. Matthews ◽  
F. von Blanckenburg

Abstract. Chitons (Mollusca) are marine invertebrates that produce radulae (teeth or rasping tongues) containing high concentrations of biomineralized magnetite and other iron-bearing minerals. As Fe isotope signatures are influenced by redox processes and biological fractionation, Fe isotopes in chiton radulae might be expected to provide an effective tracer of ambient oceanic conditions and biogeochemical cycling. Here, in a pilot study to measure Fe isotopes in marine invertebrates, we examine Fe isotopes in modern marine chiton radulae collected from different locations in the Atlantic and Pacific oceans to assess the range of isotopic values, and to test whether or not the isotopic signatures reflect seawater values. Values of δ56Fe (relative to IRMM-014) in chiton teeth range from −1.90 to 0.00 ‰ (±0.05‰ (2σ) uncertainty in δ56Fe), probably reflecting a combination of geographical control and biological fractionation processes. Comparison with published local surface seawater Fe isotope data shows a consistent negative offset of chiton teeth Fe isotope compositions relative to seawater. Strikingly, two different species from the same locality in the North Pacific (Puget Sound, Washington, USA) have distinct isotopic signatures. Tonicella lineata, which feeds on red algae in the sublittoral zone, has a mean δ56Fe of −0.65 ± 0.26‰ (2σ, 3 specimens), while Mopalia muscosa, which feeds on both green and red algae in the eulittoral zone, shows lighter isotopic values with a mean δ56Fe of −1.47 ± 0.98‰ (2σ, 5 specimens). Three possible pathways are proposed to account for the different isotopic signatures: (i) physiologically controlled processes within the chitons that lead to species-dependent fractionation; (ii) diet-controlled variability due to different Fe isotope fractionation in the red and green algal food sources; and (iii) environmentally controlled fractionation that causes variation in the isotopic signatures of bioavailable Fe in the different tidal regions. Our preliminary results suggest that while chitons are not simple recorders of the ambient seawater Fe isotopic signature, Fe isotopes provide valuable information concerning Fe biogeochemical cycling in near-shore environments, and may potentially be used to probe sources of Fe recorded in different organisms.


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