scholarly journals Visualisation tool for peptide fractionation data in proteomics: application to OFFGEL isoelectric focussing

2010 ◽  
Vol 11 (1) ◽  
Author(s):  
David-Olivier D Azulay ◽  
Hendrik Neubert ◽  
Mireia Fernández Ocaña
Geography ◽  
2017 ◽  
Vol 102 (2) ◽  
pp. 71-78 ◽  
Author(s):  
Minsung Kim ◽  
Daeheon Cho ◽  
Sang-II Lee ◽  
Jungyeop Shin
Keyword(s):  

2015 ◽  
Vol 477 ◽  
pp. 41-49 ◽  
Author(s):  
Jeonghun Yeom ◽  
Min Jung Kang ◽  
Dongyun Shin ◽  
Hyun Kyu Song ◽  
Cheolju Lee ◽  
...  

2017 ◽  
Vol 89 (17) ◽  
pp. 8884-8891 ◽  
Author(s):  
Peng Yu ◽  
Svenja Petzoldt ◽  
Mathias Wilhelm ◽  
Daniel Paul Zolg ◽  
Runsheng Zheng ◽  
...  

1973 ◽  
Vol 37 (12) ◽  
pp. 2891-2898 ◽  
Author(s):  
Masao FUJIMAKI ◽  
Soichi ARAI ◽  
Michiko YAMASHITA ◽  
Hiromichi KATO ◽  
Masatoshi NOGUCHI

1981 ◽  
Author(s):  
C Rupp ◽  
C Kuyas ◽  
A Häberli ◽  
M Furlan ◽  
E A Beck

Inherited hypodysfibrinogenemia (fibrinogen Bern I) was found in four members (two generations) of a family with no haemorrhagic or thrombotic history. Fibrin aggregation curves (350 nm, 37°C) with patient plasma or purified fibrinogen Bern I, after addition of thrombin, were normal at high calcium concentrations (5mM) but delayed at lower calcium concentrations (≤0.lmM). The release of fibrinopeptide A was normal. Whereas the polypeptide chains of fibrinogen Bern I were indistinguishable from normal fibrinogen by SDS-gel-electrophoresis, an abnormal γ-chain with a decreased negative charge was found by isoelectric focussing.Plasmic degradation o| normal fibrinogen, in the presence of calcium (≥ImM), results in only one terminal D fragment which is stabilized by calcium against further degradation of γ-chains. In contrast, degradation of fibrinogen Bern I, under the same conditions, yielded at least two additional smaller D fragments. In conclusion, fibrinogen Bern I is characterized by defective calcium binding in the D domain of the γ-chain.


1983 ◽  
Vol 2 (9) ◽  
pp. 193-196 ◽  
Author(s):  
Pier Giorgio Righetti

2017 ◽  
Vol 537 ◽  
pp. 72-77 ◽  
Author(s):  
Marcello Manfredi ◽  
Jessica Brandi ◽  
Eleonora Conte ◽  
Paolo Pidutti ◽  
Fabio Gosetti ◽  
...  

2015 ◽  
Vol 61 (1) ◽  
pp. 83-91 ◽  
Author(s):  
V.S. Skvortsov ◽  
N.N. Alekseychuk ◽  
D.V. Khudyakov ◽  
I.V. Romero Reyes

The data on approximate values of isoelectric point (pI) of peptides obtained during their fractionation by isoelectric focusing can be successfully used for the calculation of the pKa’s scale for amino acid residues. This scale can be used for pI prediction. The data of peptide fractionation also provides information about various posttranslational modifications (PTM), so that the prediction of pI may be performed for a wide range of protein forms. In this study, pKa values were calculated using a set of 13448 peptides (including 300 peptides with PTMs significant for pI calculation). The pKa constants were calculated for N-terminal, internal and C-terminal amino acid residues separately. The comparative analysis has shown that our scale increases the accuracy of pI prediction for peptides and proteins and successfully competes with traditional scales and such methods as support vector machines and artificial neural networks. The prediction performed by this scale, can be made in our program pIPredict with GUI written in JAVA as executable jar-archive. The program is freely available for academic users at http://www.ibmc.msk.ru/LPCIT/pIPredict. The software has also the possibility of pI predicting by some other scales; it recognizes some PTM and has the ability to use a custom scale.


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