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Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study
BMC Bioinformatics
◽
10.1186/1471-2105-12-s14-s2
◽
2011
◽
Vol 12
(Suppl 14)
◽
pp. S2
◽
Cited By ~ 324
Author(s):
Qiong-Yi Zhao
◽
Yi Wang
◽
Yi-Meng Kong
◽
Da Luo
◽
Xuan Li
◽
...
Keyword(s):
Comparative Study
◽
De Novo
◽
Transcriptome Assembly
◽
De Novo Transcriptome Assembly
◽
Rna Seq
◽
De Novo Transcriptome
◽
Short Read
Download Full-text
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De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers
GigaScience
◽
10.1093/gigascience/giz039
◽
2019
◽
Vol 8
(5)
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Cited By ~ 30
Author(s):
Martin Hölzer
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Keyword(s):
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RNA-Seq Based De Novo Transcriptome Assembly and Gene Discovery of Cistanche deserticola Fleshy Stem
PLoS ONE
◽
10.1371/journal.pone.0125722
◽
2015
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Vol 10
(5)
◽
pp. e0125722
◽
Cited By ~ 8
Author(s):
Yuli Li
◽
Xiliang Wang
◽
Tingting Chen
◽
Fuwen Yao
◽
Cuiping Li
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...
Keyword(s):
De Novo
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Transcriptome Assembly
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Gene Discovery
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De Novo Transcriptome Assembly
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Rna Seq
◽
De Novo Transcriptome
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Cistanche Deserticola
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A consensus approach to vertebrate de novo transcriptome assembly from RNA-seq data: assembly of the duck (Anas platyrhynchos) transcriptome
Frontiers in Genetics
◽
10.3389/fgene.2014.00190
◽
2014
◽
Vol 5
◽
Cited By ~ 24
Author(s):
Joanna Moreton
◽
Stephen P. Dunham
◽
Richard D. Emes
Keyword(s):
De Novo
◽
Anas Platyrhynchos
◽
Transcriptome Assembly
◽
De Novo Transcriptome Assembly
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Rna Seq
◽
Consensus Approach
◽
De Novo Transcriptome
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De novo transcriptome assembly of RNA-Seq reads with different strategies
Science China Life Sciences
◽
10.1007/s11427-011-4256-9
◽
2011
◽
Vol 54
(12)
◽
pp. 1129-1133
◽
Cited By ~ 11
Author(s):
Geng Chen
◽
KangPing Yin
◽
Charles Wang
◽
TieLiu Shi
Keyword(s):
De Novo
◽
Transcriptome Assembly
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De Novo Transcriptome Assembly
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Rna Seq
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Corrections to “IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads”
IEEE/ACM Transactions on Computational Biology and Bioinformatics
◽
10.1109/tcbb.2020.3005267
◽
2020
◽
Vol 17
(6)
◽
pp. 2197-2197
Author(s):
Jin Zhao
◽
Haodi Feng
◽
Daming Zhu
◽
Chi Zhang
◽
Ying Xu
Keyword(s):
De Novo
◽
Transcriptome Assembly
◽
De Novo Transcriptome Assembly
◽
Rna Seq
◽
De Novo Transcriptome
◽
New Framework
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RNA-Seq analysis and de novo transcriptome assembly of Cry toxin susceptible and tolerant Achaea janata larvae
Scientific Data
◽
10.1038/s41597-019-0160-0
◽
2019
◽
Vol 6
(1)
◽
Author(s):
Narender K. Dhania
◽
Vinod K. Chauhan
◽
R. K. Chaitanya
◽
Aparna Dutta-Gupta
Keyword(s):
De Novo
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Transcriptome Assembly
◽
De Novo Transcriptome Assembly
◽
Rna Seq
◽
De Novo Transcriptome
◽
Cry Toxin
◽
Achaea Janata
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RNA-Seq Analysis Using De Novo Transcriptome Assembly as a Reference for the Salmon Louse Caligus rogercresseyi
PLoS ONE
◽
10.1371/journal.pone.0092239
◽
2014
◽
Vol 9
(4)
◽
pp. e92239
◽
Cited By ~ 47
Author(s):
Cristian Gallardo-Escárate
◽
Valentina Valenzuela-Muñoz
◽
Gustavo Nuñez-Acuña
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De Novo
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Transcriptome Assembly
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De Novo Transcriptome Assembly
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De Novo Transcriptome
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Salmon Louse
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De novo transcriptome assembly and RNA-Seq expression analysis in blood from beluga whales of Bristol Bay, AK
Marine Genomics
◽
10.1016/j.margen.2017.08.001
◽
2017
◽
Vol 35
◽
pp. 77-92
◽
Cited By ~ 4
Author(s):
Jeanine S. Morey
◽
Kathy A. Burek Huntington
◽
Michelle Campbell
◽
Tonya M. Clauss
◽
Caroline E. Goertz
◽
...
Keyword(s):
Expression Analysis
◽
De Novo
◽
Transcriptome Assembly
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De Novo Transcriptome Assembly
◽
Rna Seq
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De Novo Transcriptome
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Bristol Bay
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Beluga Whales
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Identification of Putative Nuclear Receptors and Steroidogenic Enzymes in Murray-Darling Rainbowfish (Melanotaenia fluviatilis) Using RNA-Seq and De Novo Transcriptome Assembly
PLoS ONE
◽
10.1371/journal.pone.0142636
◽
2015
◽
Vol 10
(11)
◽
pp. e0142636
◽
Cited By ~ 2
Author(s):
Peter A. Bain
◽
Alexie Papanicolaou
◽
Anupama Kumar
Keyword(s):
Nuclear Receptors
◽
De Novo
◽
Transcriptome Assembly
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De Novo Transcriptome Assembly
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Rna Seq
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De Novo Transcriptome
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Steroidogenic Enzymes
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SSP: An interval integer linear programming for de novo transcriptome assembly and isoform discovery of RNA-seq reads
Genomics
◽
10.1016/j.ygeno.2013.10.003
◽
2013
◽
Vol 102
(5-6)
◽
pp. 507-514
◽
Cited By ~ 7
Author(s):
Zhaleh Safikhani
◽
Mehdi Sadeghi
◽
Hamid Pezeshk
◽
Changiz Eslahchi
Keyword(s):
Linear Programming
◽
Integer Linear Programming
◽
De Novo
◽
Transcriptome Assembly
◽
De Novo Transcriptome Assembly
◽
Rna Seq
◽
De Novo Transcriptome
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