scholarly journals Construction of high quality Gateway™ entry libraries and their application to yeast two-hybrid for the monocot model plant Brachypodium distachyon

2011 ◽  
Vol 11 (1) ◽  
Author(s):  
Shuanghe Cao ◽  
Chamindika L Siriwardana ◽  
Roderick W Kumimoto ◽  
Ben F Holt
HortScience ◽  
2004 ◽  
Vol 39 (4) ◽  
pp. 774C-774
Author(s):  
Rebecca Grumet* ◽  
Xiaofeng Wang ◽  
Mohamed Tawfik ◽  
Mitch McGrath

Genomics tools have become increasingly varied and valuable for crop improvement. While several species have been targeted for concerted genomic efforts, the majority of horticultural species have received limited attention. Despite the wide variety of important cucurbit crop species, the Cucurbitaceae family has had minimal effort. We have initiated projects to develop genomic tools for cucumber, Cucumis sativus L. Efforts include production of cDNA, yeast two-hybrid, and genomic libraries, and development of an EST database and website for cucumber genomics. Sequences of cucumber leaf ESTs so far indicate that the cDNA library is of high quality and has modest redundancy. Distribution of sequences, as nominally predicted from GeneBank BLAST analysis, indicates that expressed genes fall in the following general categories: photosynthesis (21%), DNA/RNA/protein synthesis (20%), metabolism (15%), signaling (5%), other (16%), and unknown proteins (23%). Cucumber sequence data have been deposited into GenBank and are available on the Michigan State Univ. website (http://genomics.msu.edu/cucumberdb). The yeast two-hybrid library has been successfully used to identify and characterize several genes based on interaction with key proteins of interest, including genes interacting with viral replicases and poly(A) binding protein. The genomic library has been verified to be of high quality and has been used to identify clones of interest.


2013 ◽  
Vol 38 (9) ◽  
pp. 1583-1591
Author(s):  
Li-Yan XUE ◽  
Bing LUO ◽  
Li-Quan ZHU ◽  
Yong-Jun YANG ◽  
He-Cui ZHANG ◽  
...  

2019 ◽  
Vol 94 (1) ◽  
Author(s):  
M. V. Borca ◽  
E. A. Vuono ◽  
E. Ramirez-Medina ◽  
P. Azzinaro ◽  
K. A. Berggren ◽  
...  

ABSTRACT The E2 protein in classical swine fever (CSF) virus (CSFV) is the major virus structural glycoprotein and is an essential component of the viral particle. E2 has been shown to be involved in several functions, including virus adsorption, induction of protective immunity, and virulence in swine. Using the yeast two-hybrid system, we previously identified a swine host protein, dynactin subunit 6 (DCTN6) (a component of the cell dynactin complex), as a specific binding partner for E2. We confirmed the interaction between DCTN6 and E2 proteins in CSFV-infected swine cells by using two additional independent methodologies, i.e., coimmunoprecipitation and proximity ligation assays. E2 residues critical for mediating the protein-protein interaction with DCTN6 were mapped by a reverse yeast two-hybrid approach using a randomly mutated E2 library. A recombinant CSFV mutant, E2ΔDCTN6v, harboring specific substitutions in those critical residues was developed to assess the importance of the E2-DCTN6 protein-protein interaction for virus replication and virulence in swine. CSFV E2ΔDCTN6v showed reduced replication, compared with the parental virus, in an established swine cell line (SK6) and in primary swine macrophage cultures. Remarkably, animals infected with CSFV E2ΔDCTN6v remained clinically normal during the 21-day observation period, which suggests that the ability of CSFV E2 to bind host DCTN6 protein efficiently during infection may play a role in viral virulence. IMPORTANCE Structural glycoprotein E2 is an important component of CSFV due to its involvement in many virus activities, particularly virus-host interactions. Here, we present the description and characterization of the protein-protein interaction between E2 and the swine host protein DCTN6 during virus infection. The E2 amino acid residues mediating the interaction with DCTN6 were also identified. A recombinant CSFV harboring mutations disrupting the E2-DCTN6 interaction was created. The effect of disrupting the E2-DCTN6 protein-protein interaction was studied using reverse genetics. It was shown that the same amino acid substitutions that abrogated the E2-DCTN6 interaction in vitro constituted a critical factor in viral virulence in the natural host, domestic swine. This highlights the potential importance of the E2-DCTN6 protein-protein interaction in CSFV virulence and provides possible mechanisms of virus attenuation for the development of improved CSF vaccines.


2002 ◽  
Vol 4 (6) ◽  
pp. 1040-1046 ◽  
Author(s):  
Yasunori Kawagoshi ◽  
Yukiko Tsukagoshi ◽  
Isao Fukunaga

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