scholarly journals Genome-wide characterization of SPL family in Medicago truncatula reveals the novel roles of miR156/SPL module in spiky pod development

BMC Genomics ◽  
2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Hongfeng Wang ◽  
Zhichao Lu ◽  
Yiteng Xu ◽  
Lingcui Kong ◽  
Jianjun Shi ◽  
...  
PLoS ONE ◽  
2021 ◽  
Vol 16 (2) ◽  
pp. e0247170
Author(s):  
Md. Soyib Hasan ◽  
Vishal Singh ◽  
Shiful Islam ◽  
Md. Sifatul Islam ◽  
Raju Ahsan ◽  
...  

Glutathione transferases (GSTs) constitute an ancient, ubiquitous, multi-functional antioxidant enzyme superfamily that has great importance on cellular detoxification against abiotic and biotic stresses as well as plant development and growth. The present study aimed to a comprehensive genome-wide identification and functional characterization of GST family in one of the economically important legume plants—Medicago truncatula. Here, we have identified a total of ninety-two putative MtGST genes that code for 120 proteins. All these members were classified into twelve classes based on their phylogenetic relationship and the presence of structural conserved domain/motif. Among them, 7 MtGST gene pairs were identified to have segmental duplication. Expression profiling of MtGST transcripts revealed their high level of organ/tissue-specific expression in most of the developmental stages and anatomical tissues. The transcripts of MtGSTU5, MtGSTU8, MtGSTU17, MtGSTU46, and MtGSTU47 showed significant up-regulation in response to various abiotic and biotic stresses. Moreover, transcripts of MtGSTU8, MtGSTU14, MtGSTU28, MtGSTU30, MtGSTU34, MtGSTU46 and MtGSTF8 were found to be highly upregulated in response to drought treatment for 24h and 48h. Among the highly stress-responsive MtGST members, MtGSTU17 showed strong affinity towards its conventional substrates reduced glutathione (GSH) and 1‐chloro‐2,4‐dinitrobenzene (CDNB) with the lowest binding energy of—5.7 kcal/mol and -6.5 kcal/mol, respectively. Furthermore, the substrate-binding site residues of MtGSTU17 were found to be highly conserved. These findings will facilitate the further functional and evolutionary characterization of GST genes in Medicago.


2019 ◽  
Vol 42 (3) ◽  
pp. 611-623 ◽  
Author(s):  
Wei Li ◽  
Ying Liu ◽  
Jinyue Zhao ◽  
Xin Zhen ◽  
Changhong Guo ◽  
...  

2021 ◽  
Vol 256 ◽  
pp. 153308
Author(s):  
Chongnan Wang ◽  
Hui Wang ◽  
Hao Zhu ◽  
Wenkai Ji ◽  
Yaling Hou ◽  
...  

2015 ◽  
Vol 14 (3) ◽  
pp. 10645-10657 ◽  
Author(s):  
Y.J. Shu ◽  
L.L. Song ◽  
J. Zhang ◽  
Y. Liu ◽  
C.H. Guo

2019 ◽  
Vol 28 (3) ◽  
pp. 320-335 ◽  
Author(s):  
Xueyang Min ◽  
Honglin Wu ◽  
Zhengshe Zhang ◽  
Xingyi Wei ◽  
Xiaoyu Jin ◽  
...  

2021 ◽  
Author(s):  
Takuma Sato ◽  
Takamichi Jogahara

Abstract The small Indian mongoose (Urva auropunctata) is listed among 100 of the World’s Worst Invasive Alien Species and eradication programs are ongoing worldwide. The development of individual and sex identification markers will improve their management. Therefore, we searched for novel mongoose short simple repeat (SSR) markers using genome-wide screening and identified 115,265 tetra-nucleotide repeat loci. Of 96 loci tested, 17 were genotyped in 28 mongooses from the Okinawa population. The genetic diversity analysis showed that the average expected and observed heterozygosity and number of alleles were 0.55, 0.56, and 2.94, respectively. Of 17 loci, one deviated from Hardy–Weinberg equilibrium and six loci pairs were likely linked to each other. However, we succeed in identifying all individuals using all of the SSR loci. The novel sex identification markers worked successfully in a test using six known sex samples. These novel SSR and sex identification markers should be useful in studies of individual identification and population genetics of the mongoose.


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