scholarly journals Inhibiting eukaryotic ribosome biogenesis

BMC Biology ◽  
2019 ◽  
Vol 17 (1) ◽  
Author(s):  
Dominik Awad ◽  
Michael Prattes ◽  
Lisa Kofler ◽  
Ingrid Rössler ◽  
Mathias Loibl ◽  
...  
2014 ◽  
Vol 207 (4) ◽  
pp. 481-498 ◽  
Author(s):  
Jochen Baßler ◽  
Helge Paternoga ◽  
Iris Holdermann ◽  
Matthias Thoms ◽  
Sander Granneman ◽  
...  

Eukaryotic ribosome biogenesis involves ∼200 assembly factors, but how these contribute to ribosome maturation is poorly understood. Here, we identify a network of factors on the nascent 60S subunit that actively remodels preribosome structure. At its hub is Rsa4, a direct substrate of the force-generating ATPase Rea1. We show that Rsa4 is connected to the central protuberance by binding to Rpl5 and to ribosomal RNA (rRNA) helix 89 of the nascent peptidyl transferase center (PTC) through Nsa2. Importantly, Nsa2 binds to helix 89 before relocation of helix 89 to the PTC. Structure-based mutations of these factors reveal the functional importance of their interactions for ribosome assembly. Thus, Rsa4 is held tightly in the preribosome and can serve as a “distribution box,” transmitting remodeling energy from Rea1 into the developing ribosome. We suggest that a relay-like factor network coupled to a mechano-enzyme is strategically positioned to relocate rRNA elements during ribosome maturation.


Cell ◽  
2016 ◽  
Vol 167 (2) ◽  
pp. 512-524.e14 ◽  
Author(s):  
Shigehiro A. Kawashima ◽  
Zhen Chen ◽  
Yuki Aoi ◽  
Anupam Patgiri ◽  
Yuki Kobayashi ◽  
...  

RNA Biology ◽  
2016 ◽  
Vol 14 (9) ◽  
pp. 1138-1152 ◽  
Author(s):  
Katherine E. Sloan ◽  
Ahmed S. Warda ◽  
Sunny Sharma ◽  
Karl-Dieter Entian ◽  
Denis L. J. Lafontaine ◽  
...  

Author(s):  
Bo Eng Cheong ◽  
Olga Beine-Golovchuk ◽  
Michal Gorka ◽  
William Wing Ho Ho ◽  
Federico Martinez-Seidel ◽  
...  

AbstractArabidopsis REIL proteins are cytosolic ribosomal 60S-biogenesis factors. After shift to 10°C, reil mutants deplete and slowly replenish non-translating eukaryotic ribosome complexes of root tissue, while tightly controlling the balance of non-translating 40S- and 60S-subunits. Reil mutations compensate by hyper-accumulation of non-translating subunits at steady-state temperature; after cold-shift, a KCl-sensitive 80S sub-fraction remains depleted. We infer that Arabidopsis buffers fluctuating translation by pre-existing non-translating ribosomes before de novo synthesis meets temperature-induced demands. Reil1 reil2 double mutants accumulate 43S-preinitiation and pre-60S-maturation complexes and have altered paralog composition of ribosomal proteins in non-translating complexes. With few exceptions, e.g. RPL3B and RPL24C, these changes are not under transcriptional control. Our study suggests requirement of de novo synthesis of eukaryotic ribosomes for long-term cold acclimation, feedback control of NUC2 and eIF3C2 transcription and links new proteins, AT1G03250, AT5G60530, to plant ribosome biogenesis. We propose that Arabidopsis requires biosynthesis of specialized ribosomes for cold acclimation.Highlight of this studyREIL proteins affect paralog composition of eukaryotic ribosomes and suppress accumulation of 43S-preinitiation and pre-60S-maturation complexes, suggesting functions of ribosome heterogeneity and biogenesis in plant cold acclimation.


2013 ◽  
Vol 126 (21) ◽  
pp. 4815-4821 ◽  
Author(s):  
E. Thomson ◽  
S. Ferreira-Cerca ◽  
E. Hurt

Biomolecules ◽  
2019 ◽  
Vol 9 (11) ◽  
pp. 715 ◽  
Author(s):  
Prattes ◽  
Lo ◽  
Bergler ◽  
Stanley

AAA-ATPases are molecular engines evolutionarily optimized for the remodeling of proteins and macromolecular assemblies. Three AAA-ATPases are currently known to be involved in the remodeling of the eukaryotic ribosome, a megadalton range ribonucleoprotein complex responsible for the translation of mRNAs into proteins. The correct assembly of the ribosome is performed by a plethora of additional and transiently acting pre-ribosome maturation factors that act in a timely and spatially orchestrated manner. Minimal disorder of the assembly cascade prohibits the formation of functional ribosomes and results in defects in proliferation and growth. Rix7, Rea1, and Drg1, which are well conserved across eukaryotes, are involved in different maturation steps of pre-60S ribosomal particles. These AAA-ATPases provide energy for the efficient removal of specific assembly factors from pre-60S particles after they have fulfilled their function in the maturation cascade. Recent structural and functional insights have provided the first glimpse into the molecular mechanism of target recognition and remodeling by Rix7, Rea1, and Drg1. Here we summarize current knowledge on the AAA-ATPases involved in eukaryotic ribosome biogenesis. We highlight the latest insights into their mechanism of mechano-chemical complex remodeling driven by advanced cryo-EM structures and the use of highly specific AAA inhibitors.


2015 ◽  
Vol 22 (11) ◽  
pp. 920-923 ◽  
Author(s):  
Malik Chaker-Margot ◽  
Mirjam Hunziker ◽  
Jonas Barandun ◽  
Brian D Dill ◽  
Sebastian Klinge

2016 ◽  
Vol 36 (6) ◽  
pp. 965-978 ◽  
Author(s):  
Jieyi Zhu ◽  
Xin Liu ◽  
Margarida Anjos ◽  
Carl C. Correll ◽  
Arlen W. Johnson

In eukaryotic ribosome biogenesis, U3 snoRNA base pairs with the pre-rRNA to promote its processing. However, U3 must be removed to allow folding of the central pseudoknot, a key feature of the small subunit. Previously, we showed that the DEAH/RHA RNA helicase Dhr1 dislodges U3 from the pre-rRNA.DHR1can be linked toUTP14, encoding an essential protein of the preribosome, through genetic interactions with the rRNA methyltransferase Bud23. Here, we report that Utp14 regulates Dhr1. Mutations within a discrete region of Utp14 reduced interaction with Dhr1 that correlated with reduced function of Utp14. These mutants accumulated Dhr1 and U3 in a pre-40S particle, mimicking a helicase-inactive Dhr1 mutant. This similarity in the phenotypes led us to propose that Utp14 activates Dhr1. Indeed, Utp14 formed a complex with Dhr1 and stimulated its unwinding activityin vitro. Moreover, theutp14mutants that mimicked a catalytically inactivedhr1mutantin vivoshowed reduced stimulation of unwinding activityin vitro. Dhr1 binding to the preribosome was substantially reduced only when both Utp14 and Bud23 were depleted. Thus, Utp14 is bifunctional; together with Bud23, it is needed for stable interaction of Dhr1 with the preribosome, and Utp14 activates Dhr1 to dislodge U3.


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