scholarly journals Panicle-SEG: a robust image segmentation method for rice panicles in the field based on deep learning and superpixel optimization

Plant Methods ◽  
2017 ◽  
Vol 13 (1) ◽  
Author(s):  
Xiong Xiong ◽  
Lingfeng Duan ◽  
Lingbo Liu ◽  
Haifu Tu ◽  
Peng Yang ◽  
...  
2019 ◽  
Vol 8 (4) ◽  
pp. 9548-9551

Fuzzy c-means clustering is a popular image segmentation technique, in which a single pixel belongs to multiple clusters, with varying degree of membership. The main drawback of this method is it sensitive to noise. This method can be improved by incorporating multiresolution stationary wavelet analysis. In this paper we develop a robust image segmentation method using Fuzzy c-means clustering and wavelet transform. The experimental result shows that the proposed method is more accurate than the Fuzzy c-means clustering.


Stroke ◽  
2021 ◽  
Author(s):  
Nannan Yu ◽  
He Yu ◽  
Haonan Li ◽  
Nannan Ma ◽  
Chunai Hu ◽  
...  

Background and Purpose: Hematoma volume (HV) is a significant diagnosis for determining the clinical stage and therapeutic approach for intracerebral hemorrhage (ICH). The aim of this study is to develop a robust deep learning segmentation method for the fast and accurate HV analysis using computed tomography. Methods: A novel dimension reduction UNet (DR-UNet) model was developed for computed tomography image segmentation and HV measurement. Two data sets, 512 ICH patients with 12 568 computed tomography slices in the retrospective data set and 50 ICH patients with 1257 slices in the prospective data set, were used for network training, validation, and internal and external testing. Moreover, 13 irregular hematoma cases, 11 subdural and epidural hematoma cases, and 50 different HV cases into 3 groups (<30, 30–60, and >60 mL) were selected to further evaluate the robustness of DR-UNet. The image segmentation performance of DR-UNet was compared with those of UNet, the fuzzy clustering method, and the active contour method. The HV measurement performance was compared using DR-UNet, UNet, and the Coniglobus formula method. Results: Using DR-UNet, the segmentation model achieved a performance similar to that of expert clinicians in 2 independent test data sets containing internal testing data (Dice of 0.861±0.139) and external testing data (Dice of 0.874±0.130). The HV measurement derived from DR-UNet was strongly correlated with that from manual segmentation (R 2 =0.9979; P <0.0001). In the irregularly shaped hematoma group and the subdural and epidural hematoma group, DR-UNet was more robust than UNet in both hematoma segmentation and HV measurement. There is no statistical significance in segmentation accuracy among 3 different HV groups. Conclusions: DR-UNet can segment hematomas from the computed tomography scans of ICH patients and quantify the HV with better accuracy and greater efficiency than the main existing methods and with similar performance to expert clinicians. Due to robust performance and stable segmentation on different ICHs, DR-UNet could facilitate the development of deep learning systems for a variety of clinical applications.


2021 ◽  
Author(s):  
Yunfei Ge ◽  
Qing Zhang ◽  
Yuantao Sun ◽  
Yidong Shen ◽  
Xijiong Wang

Abstract Background: Grayscale medical image segmentation is the key step in clinical computer-aided diagnosis. Model-driven and data-driven image segmentation methods are widely used for their less computational complexity and more accurate feature extraction. However, model-driven methods like thresholding usually suffer from wrong segmentation and noises regions because different grayscale images have distinct intensity distribution property thus pre-processing is always demanded. While data-driven methods with deep learning like encoder-decoder networks always are always accompanied by complex architectures which require amounts of training data. Methods: Combining thresholding method and deep learning, this paper presents a novel method by using 2D&3D object detection technologies. First, interest regions contain segmented object are determined with fine-tuning 2D object detection network. Then, pixels in cropped images are turned as point cloud according to their positions and grayscale values. Finally, 3D object detection network is applied to obtain bounding boxes with target points and boxes’ bottoms and tops represent thresholding values for segmentation. After projecting to 2D images, these target points could composite the segmented object. Results: Three groups of grayscale medical images are used to evaluate the proposed image segmentation method. We obtain the IoU (DSC) scores of 0.92 (0.96), 0.88 (0.94) and 0.94 (0.94) for segmentation accuracy on different datasets respectively. Also, compared with five state of the arts and clinically performed well models, our method achieves higher scores and better performance.Conclusions: The prominent segmentation results demonstrate that the built method based on 2D&3D object detection with deep learning is workable and promising for segmentation task of grayscale medical images.


2021 ◽  
pp. 114811
Author(s):  
Aditi Joshi ◽  
Mohammed Saquib Khan ◽  
Asim Niaz ◽  
Farhan Akram ◽  
Hyun Chul Song ◽  
...  

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