scholarly journals Reptiles on the wrong track? Moving beyond traditional estimators with dynamic Brownian Bridge Movement Models

2020 ◽  
Vol 8 (1) ◽  
Author(s):  
Inês Silva ◽  
Matt Crane ◽  
Benjamin Michael Marshall ◽  
Colin Thomas Strine

Abstract Background Animal movement expressed through home ranges or space-use can offer insights into spatial and habitat requirements. However, different classes of estimation methods are currently instinctively applied to answer home range, space-use or movement-based research questions regardless of their widely varying outputs, directly impacting conclusions. Recent technological advances in animal tracking (GPS and satellite tags), have enabled new methods to quantify animal space-use and movement pathways, but so far have primarily targeted mammal and avian species. Methods Most reptile spatial ecology studies only make use of two older home range estimation methods: Minimum Convex Polygons (MCP) and Kernel Density Estimators (KDE), particularly with the Least Squares Cross Validation (LSCV) and reference (href) bandwidth selection algorithms. These methods are frequently applied to answer space-use and movement-based questions. Reptile movement patterns are unique (e.g., low movement frequency, long stop-over periods), prompting investigation into whether newer movement-based methods –such as dynamic Brownian Bridge Movement Models (dBBMMs)– apply to Very High Frequency (VHF) radio-telemetry tracking data. We simulated movement data for three archetypical reptile species: a highly mobile active hunter, an ambush predator with long-distance moves and long-term sheltering periods, and an ambush predator with short-distance moves and short-term sheltering periods. We compared traditionally used estimators, MCP and KDE, with dBBMMs, across eight feasible VHF field sampling regimes for reptiles, varying from one data point every four daylight hours, to once per month. Results Although originally designed for GPS tracking studies, dBBMMs outperformed MCPs and KDE href across all tracking regimes in accurately revealing movement pathways, with only KDE LSCV performing comparably at some higher frequency sampling regimes. However, the LSCV algorithm failed to converge with these high-frequency regimes due to high site fidelity, and was unstable across sampling regimes, making its use problematic for species exhibiting long-term sheltering behaviours. We found that dBBMMs minimized the effect of individual variation, maintained low error rates balanced between omission (false negative) and commission (false positive), and performed comparatively well even under low frequency sampling regimes (e.g., once a month). Conclusions We recommend dBBMMs as a valuable alternative to MCP and KDE methods for reptile VHF telemetry data, for research questions associated with space-use and movement behaviours within the study period: they work under contemporary tracking protocols and provide more stable estimates. We demonstrate for the first time that dBBMMs can be applied confidently to low-resolution tracking data, while improving comparisons across regimes, individuals, and species.

Author(s):  
Inês Silva ◽  
Matt Crane ◽  
Benjamin Michael Marshall ◽  
Colin Thomas Strine

AbstractAnimal movement, expressed through home ranges, can offer insights into spatial and habitat requirements. However, home range estimation methods vary, directly impacting conclusions. Recent technological advances in animal tracking (GPS and satellite tags), have enabled new methods for home range estimation, but so far have primarily targeted mammal and avian movement patterns. Most reptile home range studies only make use of two older estimation methods: Minimum Convex Polygons (MCP) and Kernel Density Estimators (KDE), particularly with the Least Squares Cross Validation (LSCV) and reference (href) bandwidth selection algorithms. The unique characteristics of reptile movement patterns (e.g. low movement frequency, long stop-over periods), prompt an investigation into whether newer movement-based methods –such as dynamic Brownian Bridge Movement Models (dBBMMs)– are applicable to Very High Frequency (VHF) radio-telemetry tracking data. To assess home range estimation methods for reptile telemetry data, we simulated animal movement data for three archetypical reptile species: a highly mobile active hunter, an ambush predator with long-distance moves and long-term sheltering periods, and an ambush predator with short-distance moves and short-term sheltering periods. We compared traditionally used home range estimators, MCP and KDE, with dBBMMs, across eight feasible VHF field sampling regimes for reptiles, varying from one data point every four daylight hours, to once per month. Although originally designed for GPS tracking studies, we found that dBBMMs outperformed MCPs and KDE href across all tracking regimes, with only KDE LSCV performing comparably at some higher-frequency sampling regimes. The performance of the LSCV algorithm significantly declined with lower-tracking-frequency regimes, whereas dBBMMs error rates remained more stable. We recommend dBBMMs as a viable alternative to MCP and KDE methods for reptile VHF telemetry data: it works under contemporary tracking protocols and provides more stable estimates, improving comparisons across regimes, individuals and species.


2021 ◽  
Author(s):  
yang teng ◽  
Shupei TANG ◽  
lai heda meng ◽  
Liji Wu ◽  
Zhiqing HAN ◽  
...  

Abstract Home range size estimation is a crucial basis for developing effective conservation strategies and provides important insights into animal behavior and ecology. This study aimed at analyzing the home range variations, the influence of altitude in habitat selection, and comparing three methods in home range estimation of Chinese gorals (Naemorhedus griseus) living at a cliff landscape. The results indicated that there were significant differences between the annual home range sizes of individual animals but there was no difference in their seasonal home range sizes based on GPS tracking data of five female Chinese gorals from February 2015 to September 2018. The monthly home ranges decreased dramatically in May, June and July due to birth-giving. Notable seasonal variations were found in the micro-habitats of the Chinese gorals, as reflected by the altitude they inhabit, with higher altitude habitats used in spring and lower altitude habitats used in winter. Additionally, the altitude of monthly habitats was lowest in January, which may indicate an adaptation to low air temperature. We also found differences between estimation methods, namely minimum convex polygon (MCP), kernel density estimation (KDE) and α-local convex hull (α-LoCoH), with seasonal home range sizes derived from α-LoCoH being substantially smaller than those derived from MCP and KDE. In conclusion, our findings filled the gaps in home range study for this endangered species and contributed to effective conservation strategies. Considerations shall have to be given to the variations in home range estimation caused by different methods when dealing with rugged habitats, so as to make sure that any interpretation concerning the habitat use of the targeted species made on basis of such results would be meaningful and valid.


2021 ◽  
Author(s):  
Yang Teng ◽  
Shupei TANG ◽  
Dalai Menghe ◽  
Liji Wu ◽  
Zhiqing HAN ◽  
...  

Abstract Home range size estimation is a crucial basis for developing effective conservation strategies and provides important insights into animal behavior and ecology. This study aimed at analyzing the home range variations, the influence of altitude in habitat selection, and comparing three methods in home range estimation of Chinese gorals (Naemorhedus griseus) living at a cliff landscape. The results indicated that there were significant differences between the annual home range sizes of individual animals but there was no difference in their seasonal home range sizes based on GPS tracking data of five female Chinese gorals from February 2015 to September 2018. The monthly home ranges decreased dramatically in May, June and July due to birth-giving. Notable seasonal variations were found in the micro-habitats of the Chinese gorals, as reflected by the altitude they inhabit, with higher altitude habitats used in spring and lower altitude habitats used in winter. Additionally, the altitude of monthly habitats was lowest in January, which may indicate an adaptation to low air temperature. We also found differences between estimation methods, namely minimum convex polygon (MCP), kernel density estimation (KDE) and α-local convex hull (α-LoCoH), with seasonal home range sizes derived from α-LoCoH being substantially smaller than those derived from MCP and KDE. In conclusion, our findings filled the gaps in home range study for this endangered species and contributed to effective conservation strategies. Considerations shall have to be given to the variations in home range estimation caused by different methods when dealing with rugged habitats, so as to make sure that any interpretation concerning the habitat use of the targeted species made on basis of such results would be meaningful and valid.


PLoS ONE ◽  
2018 ◽  
Vol 13 (9) ◽  
pp. e0203449 ◽  
Author(s):  
Inês Silva ◽  
Matthew Crane ◽  
Pongthep Suwanwaree ◽  
Colin Strine ◽  
Matt Goode

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