scholarly journals Patterns and drivers of species richness and turnover of neo-endemic and palaeo-endemic vascular plants in a Mediterranean hotspot: the case of Crete, Greece

2019 ◽  
Vol 26 (1) ◽  
Author(s):  
Maria Lazarina ◽  
Athanasios S. Kallimanis ◽  
Panayotis Dimopoulos ◽  
Maria Psaralexi ◽  
Danai-Eleni Michailidou ◽  
...  
Keyword(s):  
Species Richness ◽  
Endemic Species ◽  
Vascular Plants ◽  
Species Turnover ◽  
Additive Models ◽  
Relict Species ◽  
Widespread Species ◽  
Α Diversity ◽  
Bioclimatic Variables ◽  
Biotic Effects

Abstract Background Exploring species richness and turnover patterns and their drivers can provide new insights into underlying mechanisms shaping community assembly, with significant implications for biodiversity conservation. Here, we explored diversity patterns of non-endemic, neo-endemic and palaeo-endemic vascular plants in Crete, Greece, a Mediterranean hotspot of plant richness and endemism. We evaluated the relationship between α-diversity and environmental (bioclimatic variables, topography), and anthropogenic variables by Generalized Additive Models, after accounting for spatial autocorrelation. Then, we quantified turnover using the novel concept of zeta diversity (the number of shared species by multiple sites), a framework which allows to explore the full spectrum of compositional turnover, the contribution of rare and widespread species to observed patterns and the underlying processes shaping them. Finally, we explored the abiotic and biotic effects, i.e. how well one category of species (non-endemics, palaeo-endemics, neo-endemics) predicts the patterns of the other categories, on zeta diversity by multi-site Generalized Dissimilarity Modelling. Results We found a strong correlation between neo-endemic and palaeo-endemic α-diversity, with climate, topography, and human impact driving species richness. Zeta diversity analysis revealed a sharper decrease of shared palaeo-endemic species, followed by neo-endemics, and then by non-endemics with the number of sites considered to estimate compositional turnover. Perhaps, the narrow distributions of palaeo-endemics as relict species and often habitat specialists, thus persisting locally, and of neo-endemics that may have not reached yet their potential geographical range, resulted in the observed zeta diversity decline pattern. Deterministic processes controlled species turnover of rare non-endemic and neo-endemic species, while deterministic and stochastic processes contributed similarly to palaeo-endemic turnover. However, stochasticity dominates in the case of widespread species in all occasions. The environmental and anthropogenic variables were poor predictors of compositional turnover, especially of widespread species. However, the non-endemic species composition was correlated to rare palaeo-endemics and neo-endemics, highlighting the importance of biotic effects in driving turnover patterns. Conclusions It seems that centers of neo-endemism of vascular plants coincide with centers of palaeo-endemism in Crete, but species richness and species turnover are shaped by different drivers.

scholarly journals Ecological and microbiological diversity of chigger mites, including vectors of scrub typhus, on small mammals across stratified habitats in Thailand

2019 ◽  
Author(s):  
Kittipong Chaisiri ◽  
A. Christina Gill ◽  
Alexandr A. Stekolnikov ◽  
Soawapak Hinjoy ◽  
John W. McGarry ◽  
...  
Keyword(s):  
Species Richness ◽  
Scrub Typhus ◽  
Bacterial Pathogen ◽  
Febrile Illness ◽  
Asia Pacific ◽  
Habitat Types ◽  
Widespread Species ◽  
Human Land Use ◽  
Β Diversity ◽  
Α Diversity

AbstractScrub typhus, caused by a bacterial pathogen (Orientia spp.), is a potentially life-threatening febrile illness widely distributed in the Asia-Pacific region and is emerging elsewhere. The infection is transmitted by the larval stage of trombiculid mites (“chiggers”) that often exhibit low host specificity. Here, we present an analysis of chigger ecology for 38 species sampled from 11 provinces of Thailand and microbiomes for eight widespread species. In total, >16 000 individual chiggers were collected from 1 574 small mammal specimens belonging to 18 species across four horizontally-stratified habitat types. Chigger species richness was positively associated with higher latitudes, dry seasonal conditions, and host maturity; but negatively associated with increased human land use. Human scrub typhus incidence was found to be positively correlated with chigger species richness. The bacterial microbiome of chiggers was highly diverse, with Sphingobium, Mycobacterium, Neisseriaceae and various Bacillales representing the most abundant taxa. Only Leptotrombidium deliense was found to be infected with Orientia. β-diversity, but not α-diversity, was significantly different between chigger species and geographic regions, although not between habitat types. This first field survey of the chigger microbiome provides a framework for future studies on interactions between pathogens and other symbionts in these understudied vectors.

scholarly journals Ecological and microbiological diversity of chigger mites, including vectors of scrub typhus, on small mammals across stratified habitats in Thailand

2019 ◽  
Vol 1 (1) ◽  
Author(s):  
Kittipong Chaisiri ◽  
A. Christina Gill ◽  
Alexandr A. Stekolnikov ◽  
Soawapak Hinjoy ◽  
John W. McGarry ◽  
...  
Keyword(s):  
Species Richness ◽  
Scrub Typhus ◽  
Bacterial Pathogen ◽  
Febrile Illness ◽  
Asia Pacific ◽  
Habitat Types ◽  
Widespread Species ◽  
Human Land Use ◽  
Β Diversity ◽  
Α Diversity

Abstract Background Scrub typhus, caused by a bacterial pathogen (Orientia spp.), is a potentially life-threatening febrile illness widely distributed in the Asia-Pacific region and is emerging elsewhere. The infection is transmitted by the larval stage of trombiculid mites (“chiggers”) that often exhibit low host specificity. Here, we present an analysis of chigger ecology for 38 species sampled from 11 provinces of Thailand and microbiomes for eight widespread species. Results In total, > 16,000 individual chiggers were collected from 1574 small mammal specimens belonging to 18 species across four horizontally-stratified habitat types. Chigger species richness was positively associated with higher latitudes, dry seasonal conditions, and host maturity; but negatively associated with increased human land use. Human scrub typhus incidence was found to be positively correlated with chigger species richness. The bacterial microbiome of chiggers was highly diverse, with Sphingobium, Mycobacterium, Neisseriaceae and various Bacillales representing the most abundant taxa. Only Leptotrombidium deliense was found to be infected with Orientia and another potential pathogen, Borrelia spp., was frequently detected in pools of this species. β-diversity, but not α-diversity, was significantly different between chigger species and geographic regions, although not between habitat types. Conclusion Our study identified several key environmental and host-derived correlates of chigger species richness across Thailand, which in turn impacted on human scrub typhus incidence. Moreover, this first extensive field survey of the chigger microbiome revealed species- and province-level variation in microbial β-diversity across the country, providing a framework for future studies on interactions between pathogens and other symbionts in these understudied vectors.

Holy or Not, Israel is a Palaearctic Biodiversity Hotspot

2011 ◽  
Vol 57 (3) ◽  
pp. 207-211
Author(s):  
Yoni Gavish
Keyword(s):  
Species Richness ◽  
Species Turnover ◽  
Grid Cell ◽  
Biodiversity Hotspot ◽  
Statistical Prediction ◽  
Β Diversity ◽  
Α Diversity ◽  
Species Area ◽  
Prediction Limits ◽  
Global Biodiversity

In their rebuttal to my comment, Roll et al. (2011) defend their original conclusion, by questioning the theoretical framework on which I based my analysis. They stress the importance of the statistical prediction limits and the treatment of latitudinal location as a covariate. They also add an additional grid-cell-based analysis. Here, I claim that even if provincial species-area relationships (SPAR) are not parallel, they are still different. While relying on Roll et al.'s (2011) analyses, I show that for each taxon there is at least one other provincial SPAR that lies considerably above the Palaearctic SPAR, making Palaearctic countries less favorable to be identified as a global biodiversity hotspot. I further claim that prediction limits should not be used to answer the question in focus and that adding latitude as a covariate does not alter the results. Finally, I address the grid-cell analyses of Roll et al. (2011), claiming that Israel's diversity lies mainly in the species turnover between cells (i.e., β diversity) and not on the average species richness within cells (α diversity). Therefore I hold on to my former conclusion that at least for three taxa—birds, mammals, and reptiles—Israel is indeed a Palaearctic provincial hotspot.

scholarly journals α- and β-Diversity Patterns of Macrophytes and Freshwater Fishes are Driven by Different Factors and Processes in Lakes of the Unexplored Southern Balkan Biodiversity Hotspot

Water ◽  
2020 ◽  
Vol 12 (7) ◽  
pp. 1984
Author(s):  
Anthi Oikonomou ◽  
Konstantinos Stefanidis
Keyword(s):  
Species Richness ◽  
Species Turnover ◽  
Biodiversity Hotspot ◽  
Environmental Drivers ◽  
Conservation Strategies ◽  
Compositional Variation ◽  
Related Factors ◽  
Diversity Patterns ◽  
Β Diversity ◽  
Α Diversity

Disentangling the main drivers of species richness and community composition is a central theme in ecology. Freshwater biodiversity patterns have been poorly explored; yet, it has been shown that different freshwater biota have different, often contrasting responses to environmental gradients. In this study, we investigated the relative contribution of geographical and environmental (habitat-, climate- and water quality-related) factors/gradients in shaping the α- and β-diversity patterns of macrophytes and fish in sixteen natural freshwater lakes of an unexplored Balkan biodiversity hotspot, the Southern Balkan Peninsula. We employed generalized linear modeling to identify drivers of α-diversity, and generalized dissimilarity modeling to explore commonalities and dissimilarities of among-biota β-diversity. Species richness of both biota was significantly associated with lake surface area, whereas macrophytes had an inverse response to altitude, compared to fish. Both species turnover and nestedness significantly contributed to the total β-diversity of macrophytes. In contrast, species turnover was the most significant contributor to the total fish β-diversity. We found that the compositional variation of macrophytes is primarily limited by dispersal and ultimately shaped by environmental drivers, resulting in spatially structured assemblages. Fish communities were primarily shaped by altitude, highlighting the role of species sorting. We conclude that among-biota diversity patterns are shaped by different/contrasting factors, and, thus, effective/sustainable conservation strategies should encompass multiple aquatic biota.

A catalogue of the vascular plants of the Caatinga Phytogeographical Domain: a synthesis of floristic and phytosociological surveys

Phytotaxa ◽  
2014 ◽  
Vol 160 (1) ◽  
pp. 1 ◽  
Author(s):  
Marcelo Freire Moro ◽  
Eimear Nic Lughadha ◽  
Denis L. Filer ◽  
Francisca Soares de Araújo ◽  
Fernando Roberto Martins
Keyword(s):  
Species Richness ◽  
Woody Plants ◽  
Vascular Plants ◽  
Plant Biodiversity ◽  
Ecological Data ◽  
Widespread Species ◽  
Continental Scale ◽  
Floristic Study ◽  
Plant Names ◽  
Ecological Patterns

A catalogue is presented of plant names in use in the Caatinga Phytogeographical Domain (CPD), the largest semiarid ecoregion of South America. We compiled all pubished papers we could locate with floristic and/or phytosociological data relating to the CPD and created a database of all site-based surveys, all names reported in these surveys and the basic ecological data associated with each species. We then mapped the names used in survey reports to those currently accepted in Brazil, consulting specialists to resolve taxonomic and nomenclatural issues before synthesizing the data in order to present here a list of all names in use. Thus this compilation represents the taxonomic data in use by generalist botanists on a sub continental scale. Synthesizing the previously dispersed ecological data available for the species, we explored general ecological patterns in the CPD. We also classified each survey as documenting the flora of a specific type of environment within the CPD and compared the general floristic resemblance between different environments within CPD on a biogeographical scale. Rarefaction curves and species richness estimator indices were employed in order to address the question as to whether or not the Caatinga Phytogeographical Domain can be described as well-sampled. To date over 1700 species have been reported in site-based floristic and phytosociological studies in the CPD. Most surveys focused only on woody plants, ignoring the non woody component, but we show here that a large proportion of the plant biodiversity in the Caatinga is comprised of non woody plants. We estimate that 40% of the existing species were not sampled by site-based surveys. Moreover, most of the species in our database were recorded from a single site, while a few species were considered widespread. When comparing the number of widespread species in our dataset to results published for the cerrado savannas, we show that species in Caatinga seems to have a much more restricted distribution than plants in the Cerrado. We present here a catalogue of all plant names recorded and discuss sampling and geographical issues related to the floristic study of Caatinga.

scholarly journals Bird Diversity Components in Australian Eucalyptus and North-Temperate Quercus Woodlands

The Auk ◽  
2001 ◽  
Vol 118 (2) ◽  
pp. 443-456
Author(s):  
Martin L. Cody
Keyword(s):  
Species Richness ◽  
Vegetation Structure ◽  
Species Turnover ◽  
Density Variation ◽  
Bird Diversity ◽  
Species Variation ◽  
Vegetation Density ◽  
Β Diversity ◽  
Bird Density ◽  
Α Diversity

Abstract Diversity patterns of breeding bird assemblages (exclusive of raptors and nocturnal species) of western North American oak and Australian eucalypt woodlands are derived from data recorded at 113 census sites distributed over four regions, two on each continent. Regional species richness varies by a factor of 2 among regions. The contribution to regional species totals by various diversity components is examined: α-diversity (species richness within sites), β-diversity (species turnover between sites related to differences in vegetation structure), and γ-diversity (turnover related to distance between sites, independent of habitat change). Mean α-diversity is relatively constant among regions (mean 25.5 to 29.7 species). Variation in α-diversity within regions is related to variation in vegetation structure, and bird-density variation is best predicted by a measure of vegetation density. The relationships between bird diversity and density and vegetation structure are similar in the four regions. With the influence of vegetation structure removed, there is no (Australia) or at best a modest (North America) latitudinal gradient in α-diversity. Within regions, regression analysis shows that species turnover is significantly related to both vegetation structural differences (β-diversity) and distance between sites (γ-diversity), with the latter accounting for a larger proportion of, and correlating strongly with, regional species totals. Identification of factors promoting species turnover between sites, beyond distance and vegetation effects, remains a major challenge to ecologists.

Community assembly of glass frogs (Centrolenidae) in a Neotropical wet forest: a test of the river zonation hypothesis

2018 ◽  
Vol 34 (2) ◽  
pp. 108-120
Author(s):  
Nelson Rivera ◽  
Brian Folt
Keyword(s):  
Species Richness ◽  
Community Assembly ◽  
Species Turnover ◽  
A Priori ◽  
Aquatic Organisms ◽  
Stream Order ◽  
Α Diversity ◽  
Riparian Habitats ◽  
Species Specific ◽  
Species Occupancy

Abstract:The river zonation hypothesis predicts that abiotic and biotic conditions along riparian gradients drive variation in animal communities. Glass frogs are a diverse group of Neotropical anurans that use riparian habitats exclusively for oviposition and larval development, but little is known about how glass frog communities are distributed across riparian gradients. Here, we measured glass frog community assembly across a gradient of riparian habitats from first- to fifth-order streams at La Selva Biological Station, Costa Rica. We performed repeated nocturnal frog calling surveys and built occupancy andN-mixture abundance models to test for varying patterns of species occupancy, community assembly, species richness (α-diversity) and species turnover (ß-diversity). We observed significant differences in patterns of species occupancy and community assembly across a stream-order gradient: occupancy of two species increased with stream order (Teratohyla pulverata,Hyalinobatrachium fleischmanni), one species decreased (Teratohyla spinosa), and one species did not vary (Espadarana prosoblepon). We evaluated four a priori hypotheses describing how α- and ß-diversity of centrolenids are shaped across the riparian gradient; our data were most consistent with a pattern of nested assemblages and increasing species richness along the riparian gradient. Species-specific patterns of occupancy and abundance resulted in assemblage-level differences consistent with theoretical predictions for highly aquatic organisms along riparian gradients.

Distribution Patterns and Climatic Explanations of Species Richness of Vascular Plants in Xinjiang, China

2011 ◽  
Vol 28 (1) ◽  
pp. 25-30 ◽  
Author(s):  
Li-ping LI ◽  
Nurbay Abdusalih ◽  
Shao-peng WANG ◽  
Zhi-heng WANG ◽  
Zhi-yao TANG
Keyword(s):  
Species Richness ◽  
Vascular Plants ◽  
Distribution Patterns

scholarly journals Do carabids (Coleoptera: Carabidae) and chironomids (Diptera: Chironomidae) exhibit similar diversity and distributional patterns along a spatio-temporal gradient on a glacier foreland?

2018 ◽  
Author(s):  
Mauro Gobbi ◽  
Valeria Lencioni
Keyword(s):  
Species Richness ◽  
Species Turnover ◽  
Aquatic Insect ◽  
Taxonomic Diversity ◽  
Carabid Beetles ◽  
Species Assemblages ◽  
Glacier Foreland ◽  
Distributional Patterns ◽  
Glacier Front ◽  
Spatio Temporal

Carabid beetles and chironomid midges are two dominant cold-adapted taxa, respectively on glacier forefiel terrains and in glacial-stream rivers. Although their sensitivity to high altitude climate warming is well known, no studies compare the species assemblages exhibited in glacial systems. Our study compares diversity and distributional patterns of carabids and chironomids in the foreland of the receding Amola glacier in central-eastern Italian Alps. Carabids were sampled by pitfall traps; chironomids by kick sampling in sites located at the same distance from the glacier as the terrestrial ones. The distance from the glacier front was considered as a proxy for time since deglaciation since these variables are positively correlated. We tested if the distance from the glacier front affects: i) the species richness; ii) taxonomic diversity; and iii) species turnover. Carabid species richness and taxonomic diversity increased positively from recently deglaciated sites (those c. 160 m from the glacier front) to sites deglaciated more than 160yrs ago (those located >1300 m from glacier front). Species distributions along the glacier foreland were characterized by mutually exclusive species. Conversely, no pattern in chironomid species richness and turnover was observed. Interestingly, taxonomic diversity increased significantly: closely related species were found near the glacier front, while the most taxonomically diverse species assemblages were found distant from the glacier front. Increasing glacial retreat differently affect epigeic and aquatic insect taxa: carabids respond faster to glacier retreat than do chironomids, at least in species richness and species turnover patterns.

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