A draft genome sequence of Pseudomonas veronii R4: a grapevine (Vitis vinifera L.) root-associated strain with high biocontrol potential

Abstract Background Bacillus subtilis strains have been widely studied for their numerous benefits in agriculture, including viticulture. Providing several assets, B. subtilis spp. are described as promising plant-protectors against many pathogens and as influencers to adaptations in a changing environment. This study reports the draft genome sequence of the beneficial Bacillus subtilis PTA-271, isolated from the rhizospheric soil of healthy Vitis vinifera cv. Chardonnay at Champagne Region in France, attempting to draw outlines of its full biocontrol capacity. Results The PTA-271 genome has a size of 4,001,755 bp, with 43.78% of G + C content and 3945 protein coding genes. The draft genome of PTA-271 putatively highlights a functional swarming motility system hypothesizing a colonizing capacity and a strong interacting capacity, strong survival capacities and a set of genes encoding for bioactive substances. Predicted bioactive compounds are known to: stimulate plant growth or defenses such as hormones and elicitors, influence beneficial microbiota, and counteract pathogen aggressiveness such as effectors and many kinds of detoxifying enzymes. Conclusions Plurality of the putatively encoded biomolecules by Bacillus subtilis PTA-271 genome suggests environmentally robust biocontrol potential of PTA-271, protecting plants against a broad spectrum of pathogens.

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Draft Genome Sequence of Bacillus pumilus Strain GM3FR, an Endophyte Isolated from Aerial Plant Tissues of Festuca rubra L

Genome Announcements ◽

10.1128/genomea.00085-17 ◽

2017 ◽

Vol 5 (13) ◽

Cited By ~ 4

Author(s):

Jacqueline Hollensteiner ◽

Anja Poehlein ◽

Rolf Daniel ◽

Heiko Liesegang ◽

Stefan Vidal ◽

...

Keyword(s):

Genome Sequence ◽

Bacillus Pumilus ◽

Draft Genome ◽

Endophytic Bacterium ◽

Draft Genome Sequence ◽

Plant Tissues ◽

Festuca Rubra ◽

Content Type ◽

Protein Encoding ◽

Biocontrol Potential

ABSTRACT Here, we report the draft genome sequence of Bacillus pumilus GM3FR, an endophytic bacterium isolated from aerial plant tissues of Festuca rubra L. The draft genome consists of 3.5 Mb and harbors 3,551 predicted protein-encoding genes. The genome provides insights into the biocontrol potential of B. pumilus GM3FR.

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Draft Genome Sequence of Bacillus velezensis PEBA20, a Strain with a Plant Growth-Promoting Effect and Biocontrol Potential

Genome Announcements ◽

10.1128/genomea.00286-18 ◽

2018 ◽

Vol 6 (21) ◽

Cited By ~ 1

Author(s):

Wei-Jian Kong ◽

Yong-Cai Yan ◽

Xiang-Ying Li ◽

Zhen-Yu Liu

Keyword(s):

Plant Growth ◽

Genome Sequence ◽

Draft Genome ◽

Draft Genome Sequence ◽

Bacillus Velezensis ◽

Promoting Effect ◽

Content Type ◽

Plant Growth Promoting ◽

Growth Promoting ◽

Biocontrol Potential

ABSTRACT Bacillus velezensis PEBA20 is a poplar endophyte with biocontrol activities and plant growth-promoting effects. The genome of B. velezensis PEBA20 was sequenced and the draft genome assembled, with a length of 4,249,176 bp and 4,487 genes.

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Genome sequence analysis of the beneficial Bacillus subtilis PTA-271 isolated from a Vitis vinifera (cv. Chardonnay) rhizospheric soil: assets for sustainable biocontrol.

10.21203/rs.3.rs-47930/v3 ◽

2020 ◽

Author(s):

Catarina LEAL ◽

Florence Fontaine ◽

Aziz Aziz ◽

Conceiçao Egas ◽

Christophe Clement ◽

...

Keyword(s):

Bacillus Subtilis ◽

Vitis Vinifera ◽

Genome Sequence ◽

Draft Genome ◽

Rhizospheric Soil ◽

Bioactive Substances ◽

Protein Coding ◽

Genes Encoding ◽

Stimulate Plant Growth ◽

Biocontrol Potential

Abstract Background: Bacillus subtilis strains have been widely studied for their innumerous benefits in agriculture, including viticulture. Providing numerous assets, B. subtilis spp. are described as promising plant-protectors against many pathogens and as influencers to adaptations in a changing environment. This study reports the draft genome sequence of the beneficial Bacillus subtilis PTA-271, isolated from the rhizospheric soil of healthy Vitis vinifera cv. Chardonnay at Champagne Region in France, attempting to draw outlines of its full biocontrol capacity.Results: The PTA-271 genome has a size of 4,001,755 bp, with 43.78% of G + C content and 3,945 protein coding genes. The draft genome of PTA-271 putatively highlights a functional swarming motility system hypothesizing a colonizing capacity and a strong interacting capacity, strong survival capacities and a set of genes encoding for bioactive substances. Predicted bioactive compounds are known both to: stimulate plant growth or defenses such as hormones and elicitors, influence beneficial microbiota, and counteract pathogen aggressiveness such as effectors and many kinds of detoxifying enzymes.Conclusions: Plurality of the putatively encoded biomolecules by Bacillus subtilis PTA-271 genome appears as strengths for PTA-271 biocontrol potential towards plants, highlighting a big potential against a broad spectrum of pathogens whatever environmental constraints.

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Genome Sequence of Novosphingobium sp. Strain Rr 2-17, a Nopaline Crown Gall-Associated Bacterium Isolated from Vitis vinifera L. Grapevine

Journal of Bacteriology ◽

10.1128/jb.01159-12 ◽

2012 ◽

Vol 194 (18) ◽

pp. 5137-5138 ◽

Cited By ~ 10

Author(s):

Han Ming Gan ◽

Teong Han Chew ◽

André O. Hudson ◽

Michael A. Savka

Keyword(s):

Vitis Vinifera ◽

Genome Sequence ◽

Crown Gall ◽

Draft Genome ◽

Homoserine Lactone ◽

Vitis Vinifera L ◽

Acyl Homoserine Lactone ◽

Content Type ◽

Crown Gall Tumor

ABSTRACTNovosphingobiumsp. strain Rr 2-17 is anN-acyl homoserine lactone (AHL)-producing bacterium isolated from the crown gall tumor of a grapevine. To our knowledge, this is the first draft genome announcement of a plant-associated strain from the genusNovosphingobium.

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Draft Genome Sequence of Saccharomycopsis fodiens CBS 8332, a Necrotrophic Mycoparasite with Biocontrol Potential

Genome Announcements ◽

10.1128/genomea.01278-17 ◽

2017 ◽

Vol 5 (46) ◽

Cited By ~ 3

Author(s):

Klara Junker ◽

Ana Hesselbart ◽

Jürgen Wendland

Keyword(s):

Host Cell ◽

Genome Sequence ◽

Draft Genome ◽

Draft Genome Sequence ◽

Cell Content ◽

Predator Prey ◽

Prey Interaction ◽

Biocontrol Potential

ABSTRACT Saccharomycopsis fodiens is an ascomycetous necrotrophic mycoparasite. Predator-prey interaction leads to killing of the host cell by a penetration peg and utilization of cell content by the predator. Here, we report the 14.9-Mb S. fodiens draft genome sequence assembled into 9 large scaffolds and 13 minor scaffolds (<20 kb).

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Genome sequence analysis of the beneficial Bacillus subtilis PTA-271 isolated from a Vitis vinifera (cv. Chardonnay) rhizospheric soil: assets for sustainable biocontrol.

10.21203/rs.3.rs-47930/v2 ◽

2020 ◽

Author(s):

Catarina LEAL ◽

Florence Fontaine ◽

Aziz Aziz ◽

Conceiçao Egas ◽

Christophe Clement ◽

...

Keyword(s):

Bacillus Subtilis ◽

Vitis Vinifera ◽

Genome Sequence ◽

Draft Genome ◽

Rhizospheric Soil ◽

Bioactive Substances ◽

Protein Coding ◽

Genes Encoding ◽

Stimulate Plant Growth ◽

Biocontrol Potential

Abstract Background: Bacillus subtilis strains have been widely studied for their innumerous benefits in agriculture, including viticulture. Providing numerous assets, B. subtilis spp. are described as promising plant-protectors against many pathogens and as influencers to adaptations in a changing environment. This study reports the draft genome sequence of the beneficial Bacillus subtilis PTA-271, isolated from the rhizospheric soil of healthy Vitis vinifera cv. Chardonnay at Champagne Region in France, attempting to draw outlines of its full biocontrol capacity. Results: The PTA-271 genome has a size of 4,001,755 bp, with 43.78% of G + C content and 3,945 protein coding genes. The draft genome of PTA-271 highlights (1) a functional swarming motility system hypothesizing a colonizing capacity and a strong interacting capacity, (2) strong survival capacities and (3) a set of genes encoding for bioactive substances. Bioactive compounds are known both to (i) stimulate plant growth or defenses such as hormones and elicitors, (ii) influence beneficial microbiota, and (ii) counteract pathogen aggressiveness such as effectors and many kinds of detoxifying enzymes. Conclusions: The plurality of the encoded biomolecules by Bacillus subtilis PTA-271 genome appears as strengths for PTA-271 biocontrol potential towards plants, offering a big potential against a broad spectrum of pathogens despite environmental constraints.

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Genome sequence analysis of the beneficial Bacillus subtilis PTA-271 isolated from a Vitis vinifera (cv. Chardonnay) rhizospheric soil: assets for sustainable biocontrol.

10.21203/rs.3.rs-47930/v4 ◽

2021 ◽

Author(s):

Catarina LEAL ◽

Florence Fontaine ◽

Aziz Aziz ◽

Conceiçao Egas ◽

Christophe Clement ◽

...

Keyword(s):

Bacillus Subtilis ◽

Vitis Vinifera ◽

Genome Sequence ◽

Draft Genome ◽

Rhizospheric Soil ◽

Bioactive Substances ◽

Protein Coding ◽

Genes Encoding ◽

Stimulate Plant Growth ◽

Biocontrol Potential

Abstract Background: Bacillus subtilis strains have been widely studied for their numerous benefits in agriculture, including viticulture. Providing several assets, B. subtilis spp. are described as promising plant-protectors against many pathogens and as influencers to adaptations in a changing environment. This study reports the draft genome sequence of the beneficial Bacillus subtilis PTA-271, isolated from the rhizospheric soil of healthy Vitis vinifera cv. Chardonnay at Champagne Region in France, attempting to draw outlines of its full biocontrol capacity.Results: The PTA-271 genome has a size of 4,001,755 bp, with 43.78% of G + C content and 3,945 protein coding genes. The draft genome of PTA-271 putatively highlights a functional swarming motility system hypothesizing a colonizing capacity and a strong interacting capacity, strong survival capacities and a set of genes encoding for bioactive substances. Predicted bioactive compounds are known to: stimulate plant growth or defenses such as hormones and elicitors, influence beneficial microbiota, and counteract pathogen aggressiveness such as effectors and many kinds of detoxifying enzymes.Conclusions: Plurality of the putatively encoded biomolecules by Bacillus subtilis PTA-271 genome suggests environmentally robust biocontrol potential of PTA-271, protecting plants against a broad spectrum of pathogens.

Download Full-text