The widespread distribution of soft rock and soft soil in hydrological wetland environment is a common geotechnical engineering problem encountered in coastal engineering construction. To solve this problem, a study method for consolidation and deformation characteristics of soft rock and soft soil foundation in hydrological wetland environment is proposed. Taking K9+280-K11+120 section along Fu-Nehe section of National Highway 111 as the research object, the consolidation and deformation characteristics and loading conditions of soft soil foundation under embankment filling load, treatment methods of soft rock foundation, stratum conditions, temperature changes and time effects are analyzed. The results show that although the wetland soft rock and soil layer is not thick, the settlement of soft rock and soil accounts for more than 80% of the total settlement. Negative temperature has a certain influence on the consolidation settlement of soft rock foundation, which is mainly manifested in the difference between the settlement process of the central separation zone and the roadbed soft soil foundation; the pore water pressure of soft rock foundation dissipates to varying degrees. According to the monitoring results of settlement and pore water pressure, bagged sand wells are more suitable for soft rock foundation engineering treatment in hydrological wetland. The research results can provide a reference for the study, calculation and design of consolidation and deformation of soft rock foundation in hydrological wetland.